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@@ -47,9 +47,12 @@ git clone https://github.com/helicalAI/helical.git | |
| Within the `example` folder, open the notebook of your choice. We recommend starting with `Quick-Start_Tutorial.ipynb` | ||
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| ### Current Examples: | ||
| - `Quick-Start_Tutorial.ipynb`: A tutorial to quickly get used to the helical package and environment. Try it out on Colab: [](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/Quick-Start_Tutorial.ipynb) | ||
| - `Geneformer-vs-UCE.ipynb`: Zero-Shot Reference Mapping with Geneformer & UCE and compare the outcomes. Try it out on Colab: [](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/Geneformer-vs-UCE.ipynb) | ||
| - Coming soon: new models such as scGPT, SCimilarity, scVI; benchmarking scripts; new use cases; others | ||
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| | Example | Description | Colab | | ||
| | ----------- | ----------- |----------- | | ||
| |[Quick-Start_Tutorial.ipynb](./examples/Quick-Start_Tutorial.ipynb)| A tutorial to quickly get used to the helical package and environment. | [](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/Quick-Start_Tutorial.ipynb)| | ||
| |[Geneformer-vs-UCE.ipynb](./examples/Geneformer-vs-UCE.ipynb) | Zero-Shot Reference Mapping with Geneformer & UCE and compare the outcomes. | [](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/Geneformer-vs-UCE.ipynb) | | ||
| | Coming Soon | New models such as scGPT, SCimilarity, scVI; benchmarking scripts; new use cases; others | | ||
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| ## Stuck somewhere ? Other ideas ? | ||
| We are eager to help you and interact with you. Reach out via [email protected]. | ||
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This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -47,9 +47,12 @@ git clone https://github.com/helicalAI/helical.git | |
| Within the `example` folder, open the notebook of your choice. We recommend starting with `Quick-Start_Tutorial.ipynb` | ||
|
|
||
| ### Current Examples: | ||
| - `Quick-Start_Tutorial.ipynb`: A tutorial to quickly get used to the helical package and enbironment. - [](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/Quick-Start_Tutorial.ipynb) | ||
| - `Geneformer-vs-UCE.ipynb`: Zero-Shot Reference Mapping with Geneformer & UCE and compare the outcomes. [](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/Geneformer-vs-UCE.ipynb) | ||
| - Coming soon: new models such as scGPT, SCimilarity, scVI; benchmarking scripts; new use cases; others | ||
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||
| | Example | Description | Colab | | ||
| | ----------- | ----------- |----------- | | ||
| |[Quick-Start_Tutorial.ipynb](./examples/Quick-Start_Tutorial.ipynb)| A tutorial to quickly get used to the helical package and environment. | [](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/Quick-Start_Tutorial.ipynb)| | ||
| |[Geneformer-vs-UCE.ipynb](./examples/Geneformer-vs-UCE.ipynb) | Zero-Shot Reference Mapping with Geneformer & UCE and compare the outcomes. | [](https://colab.research.google.com/github/helicalAI/helical/blob/main/examples/Geneformer-vs-UCE.ipynb) | | ||
| | Coming Soon | New models such as scGPT, SCimilarity, scVI; benchmarking scripts; new use cases; others | | ||
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|
||
| ## Stuck somewhere ? Other ideas ? | ||
| We are eager to help you and interact with you. Reach out via [email protected]. | ||
|
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