Update requirements.txt #25
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name: CI Pipeline | |
on: [push] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
timeout-minutes: 60 | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
- name: setup python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.11 #install the python needed | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -r requirements-dev.txt | |
pip install . | |
# First download before tests as they make use of the downloaded files | |
- name: Download all files | |
run: | | |
python ci/download_all.py | |
- name: Execute unittests | |
run: | | |
pytest ci/ | |
- name: Execute scGPT | |
run: | | |
python examples/run_scgpt.py | |
- name: Execute Geneformer | |
run: | | |
python examples/run_geneformer.py | |
- name: Execute UCE | |
run: | | |
python examples/run_uce.py | |
- name: Execute Hyena | |
run: | | |
python examples/run_hyena_dna.py |