Merge pull request #859 from IanCa/develop

Minor fixes to install/misc

.codeclimate.yml

@@ -60,6 +60,7 @@ exclude_patterns:
 - "**/spec/"
 - "**/test/"
 - "**/tests/"
+- "**/spec_tests/"
 - "**/docs/"
 - "Tests/"
 - "**/vendor/"

hed/models/base_input.py

@@ -29,7 +29,7 @@ def __init__(self, file, file_type=None, worksheet_name=None, has_column_names=T
         """ Constructor for the BaseInput class.
 
         Parameters:
-            file (str or file-like or pandas dataframe): An xlsx/tsv file to open.
+            file (str or file-like or pd.Dataframe): An xlsx/tsv file to open.
             file_type (str or None): ".xlsx" (Excel), ".tsv" or ".txt" (tab-separated text).
                 Derived from file if file is a filename.  Ignored if pandas dataframe.
             worksheet_name (str or None): Name of Excel workbook worksheet name to use.
@@ -554,7 +554,7 @@ def _open_dataframe_file(self, file, has_column_names, input_type):
         elif input_type in self.TEXT_EXTENSION:
             try:
                 self._dataframe = pandas.read_csv(file, delimiter='\t', header=pandas_header,
-                                                  dtype=str, keep_default_na=True, na_values=["", "null"])
+                                                  dtype=str, keep_default_na=True, na_values=("", "null"))
             except Exception as e:
                 raise HedFileError(HedExceptions.INVALID_FILE_FORMAT, str(e), self.name) from e
             # Convert nan values to a known value

hed/models/spreadsheet_input.py

@@ -37,11 +37,7 @@ def __init__(self, file=None, file_type=None, worksheet_name=None, tag_columns=N
             - An invalid dataframe was passed with size 0.
             - An invalid extension was provided.
             - A duplicate or empty column name appears.
-
-        :raises OSError:
             - Cannot open the indicated file.
-
-        :raises KeyError:
             - The specified worksheet name does not exist.
         """
 

pyproject.toml

@@ -72,7 +72,7 @@ include = ["hed*"]
 namespaces = false
 
 [tool.setuptools.package-data]
-hed = ["schema/schema_data/*.xml"]
+hed = ["schema/schema_data/*.xml", "resources/*.png"]
 
 [tool.codespell]
 skip = '*.git,*.pdf,*.xml,*.mediawiki,*.svg,versioneer.py,venv*,*.tsv,*.yaml,*.yml,*.json,*.rdf,*.jsonld,spec_tests'