Make validation row numbers 1 based, and account for header #1208
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| name: CI | |
| on: | |
| push: | |
| branches: ["*"] | |
| pull_request: | |
| branches: ["*"] | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest] | |
| python-version: [3.7, 3.9] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('docs/requirements.txt') }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade --upgrade-strategy eager pip | |
| pip install flake8 | |
| pip install coverage | |
| pip install -r requirements.txt | |
| pip install -r docs/requirements.txt | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --show-source --statistics --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| - name: Test with unittest | |
| run: | | |
| HED_GITHUB_TOKEN=${{ secrets.HED_GITHUB_TOKEN }} coverage run -m unittest | |
| - name: Archive code coverage results | |
| if: ${{matrix.python-version == '3.9'}} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: code-coverage-report | |
| path: .coverage | |
| check-secret: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| secrets-exist: ${{ steps.check-for-secrets.outputs.defined }} | |
| steps: | |
| - name: Check for Secret availability | |
| id: check-for-secrets | |
| # perform secret check & put boolean result as an output | |
| shell: bash | |
| run: | | |
| if [ "${{ secrets.CC_TEST_REPORTER_ID }}" != '' ]; then | |
| echo "defined=true" >> $GITHUB_OUTPUT; | |
| else | |
| echo "defined=false" >> $GITHUB_OUTPUT; | |
| fi | |
| coverage: | |
| name: Publish coverage | |
| needs: [build, check-secret] | |
| runs-on: ubuntu-latest | |
| if: needs.check-secret.outputs.secrets-exist == 'true' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('docs/requirements.txt') }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade --upgrade-strategy eager pip | |
| pip install flake8 | |
| pip install coverage | |
| pip install -r requirements.txt | |
| pip install -r docs/requirements.txt | |
| - name: Download a single artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: code-coverage-report | |
| - name: publish-coverages | |
| with: | |
| coverageCommand: coverage xml | |
| debug: true | |
| uses: paambaati/[email protected] | |
| env: | |
| CC_TEST_REPORTER_ID: ${{ secrets.CC_TEST_REPORTER_ID }} | |