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Merge pull request #311 from VisLab/develop
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Updated the docs to include new preprint in whats new
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VisLab authored Sep 12, 2023
2 parents 806dba8 + 9b68324 commit ca5d8cb
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25 changes: 16 additions & 9 deletions docs/source/DocumentationSummary.md
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# Documentation summary


## 1. HED publications
## HED publications

### 1.1. Journal articles
### Journal articles

Explanation of the history, development, and motivation for third generation HED:

Expand All @@ -19,7 +19,14 @@ Detailed case study in using HED-3G for tagging:
> NeuroImage Special Issue Practice in MEEG. NeuroImage 245 (2021) 118766.
> [https://www.sciencedirect.com/science/article/pii/S1053811921010387](https://www.sciencedirect.com/science/article/pii/S1053811921010387).
### 1.2. Book chapters
Framework for annotating and analyzing events in context:

> Makeig, S. and K. Robbins (2023 under review).
> Events in context - A framework for the study of brain, experience and behavior.
> **Preprint**: [**https://psyarxiv.com/e7jbm**](https://psyarxiv.com/e7jbm)
> DOI: 10.31234/osf.io/e7jbm
### Book chapters

> Truong, D., Robbins, K., Delorme, A., and S. Makeig (in press).
> End-to-end processing of M/EEG data with BIDS, HED, and EEGLAB.
Expand All @@ -44,7 +51,7 @@ The `.mediawiki` sources can be viewed on the
[**hed-schemas](https://github.com/hed-standard/hed-schemas) GitHub repository using
GitHub's default markdown viewer.

## 3. HED Websites
## HED Websites

The following is a summary of the HED-related websites:

Expand All @@ -55,7 +62,7 @@ The following is a summary of the HED-related websites:
* - Description
- Site
* - HED organization website
* - HED project homepage
- [https://www.hedtags.org](https://www.hedtags.org)
* - HED resources
- [https://www.hed-resources.org](https://www.hed-resources.org)
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`````


## 4. HED working documents
## HED working documents

Mapping of HED terms and their descriptions to known ontologies is:

> HED-3G Working Document on Ontology mapping
> HED-3G Working Document on Ontology mapping
> [https://drive.google.com/file/d/13y17OwwNBlHdhB7hguSmOBdxn0Uk4hsI/view?usp=sharing](https://drive.google.com/file/d/13y17OwwNBlHdhB7hguSmOBdxn0Uk4hsI/view?usp=sharing)
Two other working documents hold portions of the HED-3G specification that are under development
and will not be finalized for Release 1:

> HED-3G Working Document on Spatial Annotation
> HED-3G Working Document on Spatial Annotation
> [https://docs.google.com/document/d/1jpSASpWQwOKtan15iQeiYHVewvEeefcBUn1xipNH5-8/view?usp=sharing](https://docs.google.com/document/d/1jpSASpWQwOKtan15iQeiYHVewvEeefcBUn1xipNH5-8/view?usp=sharing)
> HED-3G Working Document on Task Annotation
> HED-3G Working Document on Task Annotation
> [https://docs.google.com/document/d/1eGRI_gkYutmwmAl524ezwkX7VwikrLTQa9t8PocQMlU/view?usp=sharing](https://docs.google.com/document/d/1eGRI_gkYutmwmAl524ezwkX7VwikrLTQa9t8PocQMlU/view?usp=sharing)
6 changes: 6 additions & 0 deletions docs/source/WhatsNew.md
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> Half-day workshop at [**INCF Assembly 2023**](https://neuroinformatics.incf.org/register).
> Speakers: Scott Makeig, Dung Truong, Dora Hermes, and Monique Dennisen.
**September 12, 2023**: **New HED preprint on events in context**
> *Events in context - A framework for the study of brain, experience and behavior*
> by Scott Makeig (UCSD) and Kay Robbins (UTSA)
> **Preprint**: [**https://psyarxiv.com/e7jbm**](https://psyarxiv.com/e7jbm)
> DOI: 10.31234/osf.io/e7jbm
**August 21, 2023**: **INCF 2022 HED workshop videos available**
> [**Part 1: Documenting temporal structure** (48:04)](https://youtu.be/cCp314DXMos)
> [**Part 2: Annotating a BIDS dataset** (59:58)](https://youtu.be/BBiGNMyY3x8)
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5 changes: 3 additions & 2 deletions hedcode/matlab_scripts/web_services/runAllTests.m
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host = 'https://hedtools.org/hed';
%host = 'https://hedtools.org/hed_dev';
%host = 'https://hedtools.org/hed';
host = 'http://127.0.0.1:5000';
%host = 'http://127.0.0.1:5000';


errorMap = containers.Map('KeyType', 'char', 'ValueType', 'any');
errorMap('testGetServices') = testGetServices(host);
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