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.nojekyll

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contact/contact.html

@@ -313,7 +313,7 @@ <h1 class="title">Contact the Sandbox</h1>
 
 <div class="quarto-listing quarto-listing-container-grid" id="listing-listing">
 <div class="list grid quarto-listing-cols-5">
-<div class="g-col-1" data-index="0" data-listing-file-modified-sort="1736434685308" data-listing-reading-time-sort="1" data-listing-word-count-sort="47">
+<div class="g-col-1" data-index="0" data-listing-file-modified-sort="1736844560773" data-listing-reading-time-sort="1" data-listing-word-count-sort="47">
 <a href="../cards/AlbaMartinez.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top"><img src="../cards/alba.jpg" style="height: 300px;"  class="thumbnail-image card-img"/></p>
@@ -328,7 +328,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
 </div>
-<div class="g-col-1" data-index="1" data-listing-file-modified-sort="1736434685308" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
+<div class="g-col-1" data-index="1" data-listing-file-modified-sort="1736844560773" data-listing-reading-time-sort="1" data-listing-word-count-sort="41">
 <a href="../cards/JakobSkelmose.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top"><img src="../cards/jaKob.jpg" style="height: 300px;"  class="thumbnail-image card-img"/></p>
@@ -343,7 +343,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
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-<div class="g-col-1" data-index="2" data-listing-file-modified-sort="1736434685308" data-listing-reading-time-sort="1" data-listing-word-count-sort="133">
+<div class="g-col-1" data-index="2" data-listing-file-modified-sort="1736844560773" data-listing-reading-time-sort="1" data-listing-word-count-sort="133">
 <a href="../cards/JenniferBartell.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top"><img src="../cards/jennie.jpg" style="height: 300px;"  class="thumbnail-image card-img"/></p>
@@ -358,7 +358,7 @@ <h5 class="no-anchor card-title listing-title">
 </div>
 </a>
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-<div class="g-col-1" data-index="3" data-listing-file-modified-sort="1736434685308" data-listing-reading-time-sort="1" data-listing-word-count-sort="53">
+<div class="g-col-1" data-index="3" data-listing-file-modified-sort="1736844560773" data-listing-reading-time-sort="1" data-listing-word-count-sort="53">
 <a href="../cards/SamueleSoraggi.html" class="quarto-grid-link">
 <div class="quarto-grid-item card h-100 card-left">
 <p class="card-img-top"><img src="../cards/samuele.jpg" style="height: 300px;"  class="thumbnail-image card-img"/></p>

datasets/datapolicy.html

@@ -195,7 +195,7 @@ <h1 class="title">Data policy</h1>
     <div>
     <div class="quarto-title-meta-heading">Modified</div>
     <div class="quarto-title-meta-contents">
-      <p class="date-modified">January 9, 2025</p>
+      <p class="date-modified">January 14, 2025</p>
     </div>
   </div>
 

datasets/synthdata.html

@@ -199,7 +199,7 @@ <h1 class="title">Synthetic data</h1>
     <div>
     <div class="quarto-title-meta-heading">Modified</div>
     <div class="quarto-title-meta-contents">
-      <p class="date-modified">January 9, 2025</p>
+      <p class="date-modified">January 14, 2025</p>
     </div>
   </div>
 

modules/index.html

@@ -190,7 +190,7 @@ <h1 class="title">Training modules</h1>
     <div>
     <div class="quarto-title-meta-heading">Modified</div>
     <div class="quarto-title-meta-contents">
-      <p class="date-modified">January 9, 2025</p>
+      <p class="date-modified">January 14, 2025</p>
     </div>
   </div>
 

news/upcoming/2025-03-24-genomics.html

@@ -8,7 +8,7 @@
 
 <meta name="author" content="ARM and SS">
 <meta name="dcterms.date" content="2025-03-24">
-<meta name="description" content="Opening for signup soon">
+<meta name="description" content="Click to sign-up">
 
 <title>Genomics Sandbox – Health Data Science Sandbox</title>
 <style>
@@ -182,7 +182,7 @@ <h1 class="title">Genomics Sandbox</h1>
 
 <div>
   <div class="description">
-    Opening for signup soon
+    Click to sign-up
   </div>
 </div>
 
@@ -211,7 +211,7 @@ <h1 class="title">Genomics Sandbox</h1>
 </header>
 
 
-<p>Opening for signup soon.</p>
+<p>Sign up <a href="https://eventsignup.ku.dk/gwaswiththegenomicssandboxmar2025">here</a>.</p>
 <p>The Sandbox Genomics course is an intensive four-day program focused on training participants in Population genetics with a focus on Genome-Wide Association Studies (GWAS). The first day covers foundational genetics concepts through lectures and discussions, followed by a step-by-step guide to performing a GWAS study, from data preprocessing to results interpretation. A key feature is a hands-on GWAS case study where participants complete the entire process, including managing missing genotypes, conducting linear regression for association testing, and understanding linkage disequilibrium for fine-mapping. The course emphasizes practical skills, best practices, and common challenges in GWAS, especially when using high-performance computing.</p>
 
 

news/upcoming/2025-04-7-hpcLaunch.html

@@ -8,7 +8,7 @@
 
 <meta name="author" content="JB &amp; ARM">
 <meta name="dcterms.date" content="2025-04-07">
-<meta name="description" content="Opening for signup soon">
+<meta name="description" content="Click to sign-up">
 
 <title>HPC launch – Health Data Science Sandbox</title>
 <style>
@@ -182,7 +182,7 @@ <h1 class="title">HPC launch</h1>
 
 <div>
   <div class="description">
-    Opening for signup soon
+    Click to sign-up
   </div>
 </div>
 
@@ -211,7 +211,7 @@ <h1 class="title">HPC launch</h1>
 </header>
 
 
-<p>Opening for signup soon.</p>
+<p>Sign up <a href="https://eventsignup.ku.dk/hpc-launchspring2025">here</a>.</p>
 <p>The goal of the course HPC-Launch is to support the launch (and/or reconfiguration) of health data projects from an efficient and modern computing and data management perspective. Targeting trainees and researchers in bioinformatics and large-scale health records, the course will consist of two modules: High-Performance Computing (HPC) and Research Data management (RDM). With the HPC module, we want to expand understanding and efficient use of HPC resources for complex health data science projects. We will fill gaps in technical understanding for beginner to intermediate users of supercomputing platforms and share up-to-date information on computing resources available to Danish researchers and how to get access. With the RDM module, we will introduce the importance of research data management practices and demonstrate practical tips and tools for its implementation at a local research group level. Overall, the course will be a mix of theory, discussion of real-world use cases and participant needs, and active practice/exercises conducted on the HPC platform UCloud (SDU) using bash and relevant IDEs.</p>
 
 

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-    "text": "Opening for signup soon.\nThe Sandbox Genomics course is an intensive four-day program focused on training participants in Population genetics with a focus on Genome-Wide Association Studies (GWAS). The first day covers foundational genetics concepts through lectures and discussions, followed by a step-by-step guide to performing a GWAS study, from data preprocessing to results interpretation. A key feature is a hands-on GWAS case study where participants complete the entire process, including managing missing genotypes, conducting linear regression for association testing, and understanding linkage disequilibrium for fine-mapping. The course emphasizes practical skills, best practices, and common challenges in GWAS, especially when using high-performance computing."
+    "text": "Sign up here.\nThe Sandbox Genomics course is an intensive four-day program focused on training participants in Population genetics with a focus on Genome-Wide Association Studies (GWAS). The first day covers foundational genetics concepts through lectures and discussions, followed by a step-by-step guide to performing a GWAS study, from data preprocessing to results interpretation. A key feature is a hands-on GWAS case study where participants complete the entire process, including managing missing genotypes, conducting linear regression for association testing, and understanding linkage disequilibrium for fine-mapping. The course emphasizes practical skills, best practices, and common challenges in GWAS, especially when using high-performance computing."
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-    "text": "Sandbox data scientists routinely lead or contribute to courses and workshops at host universities in Denmark. Check out upcoming events here! All our past events are listed in the table below.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nGenomics Sandbox\n\n\n\ngenomics\n\n\ngwas\n\n\nKU\n\n\ncourse\n\n\n\nOpening for signup soon\n\n\n\nMar 24, 2025\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nHPC launch\n\n\n\nHPC\n\n\nRDM\n\n\nKU\n\n\ncourse\n\n\n\nOpening for signup soon\n\n\n\nApr 7, 2025\n\n\n\n\n\n\n\n\n\n\n\n\nIntro to NGS data analysis - Summer School\n\n\n\nGenomics\n\n\nbulkRNA\n\n\nscRNA\n\n\nAU\n\n\ncourse\n\n\n\n\n\n\n\nJun 23, 2025\n\n\n\n\n\n\n\n\n\n\n\n\nHPC Pipes\n\n\n\nsnakemake\n\n\nconda\n\n\nKU\n\n\ncourse\n\n\n\nOpening for signup soon\n\n\n\nAug 25, 2025\n\n\n\n\n\n\n\n\nNo matching items\n\n\n\n   \n     \n     \n       Order By\n       Default\n         \n          Event title\n        \n     \n  \n    \n      \n      \n    \n\n\n\n\n\nEvent title\n\n\nDates\n\n\nLocation\n\n\nOrganizers\n\n\n\n\n\n\nBulk RNAseq analysis\n\n\n18-20 November 2024\n\n\nUniversity of Copenhagen\n\n\nHeaDS\n\n\n\n\nHPC-Pipes\n\n\n4-5 November 2024\n\n\nUniversity of Copenhagen\n\n\nA.Refoyo and J.Bartell\n\n\n\n\nHPC-Launch\n\n\n30 September 2024\n\n\nUniversity of Copenhagen\n\n\nJ.Bartell and A.Refoyo\n\n\n\n\nWorkshop at scVerse2024\n\n\n10 September 2024\n\n\nTechnical University of Munich\n\n\nSamuele Soraggi\n\n\n\n\nABC - Accessible Bioinformatics Cafe in Aarhus\n\n\n1 September 2024\n\n\nAarhus University\n\n\nSamuele Soraggi\n\n\n\n\nHow I learned to stop worrying and love RDM\n\n\n21 August 2024\n\n\nADBi Conference\n\n\nA.Refoyo and J.Bartell\n\n\n\n\nIntro to NGS data analysis - Summer School\n\n\n1-5 July 2024\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nWorkshop: Digging into the Health Data Science Sandbox\n\n\n18-19 April 2024\n\n\nKU\n\n\nJ.Bartell and A.Refoyo\n\n\n\n\nCourse support at SDU\n\n\n9 February 2024\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nDDSA PhD meetup and D3A conference\n\n\n1 February 2024\n\n\nDDSA\n\n\nJennifer Bartell\n\n\n\n\nA primer for Synthetic health data\n\n\n31 January 2024\n\n\n \n\n\nJennifer Bartell\n\n\n\n\nNNF Collaborative Data Science award news: the SE3D project!\n\n\n12 December 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nProteomics App updates\n\n\n9 November 2023\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nA course on RDS for NGS data\n\n\n7 November 2023\n\n\nDTU\n\n\nJose AR Herrera\n\n\n\n\nFrom Data Chaos to Data Harmony\n\n\n7 November 2023\n\n\nDeiC conference\n\n\nJennifer Bartell\n\n\n\n\n‘Digging into the Health Data Science Sandbox’ workshop\n\n\n7 September 2023\n\n\nAU\n\n\nJennifer Bartell\n\n\n\n\nSandbox workshop in Aarhus\n\n\n29 August 2023\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nWorkshop on bulkRNA-seq data\n\n\n19 June 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSandbox App updates on UCloud rolled out\n\n\n31 May 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSecond bulk RNA-seq course at the University of Copenhagen\n\n\n18 January 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSandbox support for Spring 2023 courses\n\n\n10 January 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSoft launch of the new Course Platform at Computerome\n\n\n8 January 2023\n\n\nKU\n\n\nJesper R Christiansen\n\n\n\n\nSandbox support for ‘Advanced Statistical Learning’\n\n\n30 November 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nSandbox support within ‘Workshops in Applied Bioinformatics’ at SDU\n\n\n15 November 2022\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nTranscriptomics Sandbox app launched on UCloud!\n\n\n15 November 2022\n\n\nKU\n\n\nJose AR Herrera\n\n\n\n\nGenomics Sandbox app launched on UCloud!\n\n\n6 September 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nBulk RNA-seq course at University of Copenhagen\n\n\n18 August 2022\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nGenomics course at Aarhus University\n\n\n1 June 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nBasics of Personalized Medicine - final wrap-up\n\n\n22 April 2022\n\n\nAAU\n\n\nJennifer Bartell\n\n\n\n\nBasics of Personalized Medicine - MSc course\n\n\n1 April 2022\n\n\nAAU\n\n\nJennifer Bartell\n\n\n\n\n\nNo matching items"
+    "text": "Sandbox data scientists routinely lead or contribute to courses and workshops at host universities in Denmark. Check out upcoming events here! All our past events are listed in the table below.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nGenomics Sandbox\n\n\n\ngenomics\n\n\ngwas\n\n\nKU\n\n\ncourse\n\n\n\nClick to sign-up\n\n\n\nMar 24, 2025\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nHPC launch\n\n\n\nHPC\n\n\nRDM\n\n\nKU\n\n\ncourse\n\n\n\nClick to sign-up\n\n\n\nApr 7, 2025\n\n\n\n\n\n\n\n\n\n\n\n\nIntro to NGS data analysis - Summer School\n\n\n\nGenomics\n\n\nbulkRNA\n\n\nscRNA\n\n\nAU\n\n\ncourse\n\n\n\n\n\n\n\nJun 23, 2025\n\n\n\n\n\n\n\n\n\n\n\n\nHPC Pipes\n\n\n\nsnakemake\n\n\nconda\n\n\nKU\n\n\ncourse\n\n\n\nOpening for signup soon\n\n\n\nAug 25, 2025\n\n\n\n\n\n\n\n\nNo matching items\n\n\n\n   \n     \n     \n       Order By\n       Default\n         \n          Event title\n        \n     \n  \n    \n      \n      \n    \n\n\n\n\n\nEvent title\n\n\nDates\n\n\nLocation\n\n\nOrganizers\n\n\n\n\n\n\nBulk RNAseq analysis\n\n\n18-20 November 2024\n\n\nUniversity of Copenhagen\n\n\nHeaDS\n\n\n\n\nHPC-Pipes\n\n\n4-5 November 2024\n\n\nUniversity of Copenhagen\n\n\nA.Refoyo and J.Bartell\n\n\n\n\nHPC-Launch\n\n\n30 September 2024\n\n\nUniversity of Copenhagen\n\n\nJ.Bartell and A.Refoyo\n\n\n\n\nWorkshop at scVerse2024\n\n\n10 September 2024\n\n\nTechnical University of Munich\n\n\nSamuele Soraggi\n\n\n\n\nABC - Accessible Bioinformatics Cafe in Aarhus\n\n\n1 September 2024\n\n\nAarhus University\n\n\nSamuele Soraggi\n\n\n\n\nHow I learned to stop worrying and love RDM\n\n\n21 August 2024\n\n\nADBi Conference\n\n\nA.Refoyo and J.Bartell\n\n\n\n\nIntro to NGS data analysis - Summer School\n\n\n1-5 July 2024\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nWorkshop: Digging into the Health Data Science Sandbox\n\n\n18-19 April 2024\n\n\nKU\n\n\nJ.Bartell and A.Refoyo\n\n\n\n\nCourse support at SDU\n\n\n9 February 2024\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nDDSA PhD meetup and D3A conference\n\n\n1 February 2024\n\n\nDDSA\n\n\nJennifer Bartell\n\n\n\n\nA primer for Synthetic health data\n\n\n31 January 2024\n\n\n \n\n\nJennifer Bartell\n\n\n\n\nNNF Collaborative Data Science award news: the SE3D project!\n\n\n12 December 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nProteomics App updates\n\n\n9 November 2023\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nA course on RDS for NGS data\n\n\n7 November 2023\n\n\nDTU\n\n\nJose AR Herrera\n\n\n\n\nFrom Data Chaos to Data Harmony\n\n\n7 November 2023\n\n\nDeiC conference\n\n\nJennifer Bartell\n\n\n\n\n‘Digging into the Health Data Science Sandbox’ workshop\n\n\n7 September 2023\n\n\nAU\n\n\nJennifer Bartell\n\n\n\n\nSandbox workshop in Aarhus\n\n\n29 August 2023\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nWorkshop on bulkRNA-seq data\n\n\n19 June 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSandbox App updates on UCloud rolled out\n\n\n31 May 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSecond bulk RNA-seq course at the University of Copenhagen\n\n\n18 January 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSandbox support for Spring 2023 courses\n\n\n10 January 2023\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nSoft launch of the new Course Platform at Computerome\n\n\n8 January 2023\n\n\nKU\n\n\nJesper R Christiansen\n\n\n\n\nSandbox support for ‘Advanced Statistical Learning’\n\n\n30 November 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nSandbox support within ‘Workshops in Applied Bioinformatics’ at SDU\n\n\n15 November 2022\n\n\nSDU\n\n\nJacob Fredegaard Hansen\n\n\n\n\nTranscriptomics Sandbox app launched on UCloud!\n\n\n15 November 2022\n\n\nKU\n\n\nJose AR Herrera\n\n\n\n\nGenomics Sandbox app launched on UCloud!\n\n\n6 September 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nBulk RNA-seq course at University of Copenhagen\n\n\n18 August 2022\n\n\nKU\n\n\nJennifer Bartell\n\n\n\n\nGenomics course at Aarhus University\n\n\n1 June 2022\n\n\nAU\n\n\nSamuele Soraggi\n\n\n\n\nBasics of Personalized Medicine - final wrap-up\n\n\n22 April 2022\n\n\nAAU\n\n\nJennifer Bartell\n\n\n\n\nBasics of Personalized Medicine - MSc course\n\n\n1 April 2022\n\n\nAAU\n\n\nJennifer Bartell\n\n\n\n\n\nNo matching items"
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@@ -585,7 +585,7 @@
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-    "text": "Opening for signup soon.\nThe goal of the course HPC-Launch is to support the launch (and/or reconfiguration) of health data projects from an efficient and modern computing and data management perspective. Targeting trainees and researchers in bioinformatics and large-scale health records, the course will consist of two modules: High-Performance Computing (HPC) and Research Data management (RDM). With the HPC module, we want to expand understanding and efficient use of HPC resources for complex health data science projects. We will fill gaps in technical understanding for beginner to intermediate users of supercomputing platforms and share up-to-date information on computing resources available to Danish researchers and how to get access. With the RDM module, we will introduce the importance of research data management practices and demonstrate practical tips and tools for its implementation at a local research group level. Overall, the course will be a mix of theory, discussion of real-world use cases and participant needs, and active practice/exercises conducted on the HPC platform UCloud (SDU) using bash and relevant IDEs."
+    "text": "Sign up here.\nThe goal of the course HPC-Launch is to support the launch (and/or reconfiguration) of health data projects from an efficient and modern computing and data management perspective. Targeting trainees and researchers in bioinformatics and large-scale health records, the course will consist of two modules: High-Performance Computing (HPC) and Research Data management (RDM). With the HPC module, we want to expand understanding and efficient use of HPC resources for complex health data science projects. We will fill gaps in technical understanding for beginner to intermediate users of supercomputing platforms and share up-to-date information on computing resources available to Danish researchers and how to get access. With the RDM module, we will introduce the importance of research data management practices and demonstrate practical tips and tools for its implementation at a local research group level. Overall, the course will be a mix of theory, discussion of real-world use cases and participant needs, and active practice/exercises conducted on the HPC platform UCloud (SDU) using bash and relevant IDEs."
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