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Update 06_pipelines.qmd
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albarema authored Apr 22, 2024
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This lesson emphasized the importance of reproducibility in computational research and provided practical techniques for achieving it. Using annotated notebooks, pipeline frameworks, and community-curated pipelines, such as those developed by the nf-core community, enhances reproducibility and readability.

### Sources
- [RDMkit, Elixir Data Management - Data Analysis](https://rdmkit.elixir-europe.org/data_analysis)
- [Code documentation by Johns Hopkins Sheridan libraries](https://guides.library.jhu.edu/c.php?g=1096705&p=8066729). This link includes best practices for code documentation, style guides, R markdown, Jupyter Notebook, version control, and code repository.
- [Guide to reproducible code in ecology and evolution](https://www.britishecologicalsociety.org/wp-content/uploads/2017/12/guide-to-reproducible-code.pdf)
- [Best practices for Scientific computing](https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745)
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