checkpoint

docs/write_foo.py

@@ -23,10 +23,11 @@
 
 test_ts = TimeSeries(
     name="test_compressed_timeseries",
-    data=H5DataIO(data=data, compression=True),
+    data=tw(item=data, termset=terms),
     unit=tw(item="Homo sapiens", termset=terms),
     timestamps=timestamps,
 )
+breakpoint()
 
 nwbfile = NWBFile(
     session_description="my first synthetic recording",

src/hdmf/backends/hdf5/h5tools.py

@@ -1100,8 +1100,8 @@ def write_dataset(self, **kwargs):  # noqa: C901
             dataio = data
             link_data = data.link_data
             data = data.data
-        if isinstance(data, TermSetWrapper):
-            data = data.item
+        # if isinstance(data, TermSetWrapper):
+        #     data = data.item
         else:
             options['io_settings'] = {}
         attributes = builder.attributes

src/hdmf/build/objectmapper.py

@@ -565,8 +565,8 @@ def get_attr_value(self, **kwargs):
                 msg = ("%s '%s' does not have attribute '%s' for mapping to spec: %s"
                        % (container.__class__.__name__, container.name, attr_name, spec))
                 raise ContainerConfigurationError(msg)
-            if isinstance(attr_val, TermSetWrapper):
-                    attr_val = attr_val.item
+            # if isinstance(attr_val, TermSetWrapper):
+            #         attr_val = attr_val.item
             if attr_val is not None:
                 attr_val = self.__convert_string(attr_val, spec)
                 spec_dt = self.__get_data_type(spec)

src/hdmf/term_set.py

@@ -185,7 +185,7 @@ class TermSetWrapper:
     def __init__(self, **kwargs):
         self.__item = kwargs['item']
         self.__termset = kwargs['termset']
-        self.__validate()
+        # self.__validate()
 
     def __validate(self):
         # check if list, tuple, array, Data

tests/unit/test_term_set.py

@@ -1,7 +1,9 @@
 import os
 
-from hdmf.term_set import TermSet
+from hdmf.term_set import TermSet, TermSetWrapper
 from hdmf.testing import TestCase, remove_test_file
+from hdmf.common import VectorData
+import numpy as np
 
 
 CUR_DIR = os.path.dirname(os.path.realpath(__file__))
@@ -107,12 +109,17 @@ class TestTermSetWrapper(TestCase):
 
     def setUp(self):
         self.termset = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
-
-    def test_item(self):
-        pass
-
-    def test_termset(self):
-        pass
+        self.data = VectorData(
+            name='Species_1',
+            description='...',
+            data=np.array('Homo sapiens'),
+        )
+
+    def test_properties(self):
+        wrapped_item = TermSetWrapper(item=self.data, termset=self.termset)
+        self.assertEqual(wrapped_item.item.object_id, self.data.object_id)
+        self.assertEqual(wrapped_item.termset.view_set, self.termset.view_set)
+        self.assertEqual(wrapped_item.dtype, 'i')
 
     def test_dtype(self):
         pass