update test/coverage

hdmf-dev · Oct 17, 2023 · d3f99fc · d3f99fc
1 parent 71fa87c
commit d3f99fc
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Showing 6 changed files with 2,089 additions and 15 deletions.
diff --git a/src/hdmf/term_set.py b/src/hdmf/term_set.py
@@ -63,7 +63,7 @@ def __repr__(self):
         re += "Schema Path: %s\n" % self.term_schema_path
         return re
 
-    def _repr_html_(self):
+    def _repr_html_(self): # pragma: no cover
         re = "<p><b>" + "Schema Path: " + "</b>" + self.term_schema_path + "<br>" + "</p>"
         re += "<p><b>" + "Sources: " + "</b>" + ", ".join(list(self.sources.keys())) + "</p>"
         return re

diff --git a/tests/unit/common/test_resources.py b/tests/unit/common/test_resources.py
@@ -270,7 +270,7 @@ def test_add_ref_search_for_file_error(self):
 
     @unittest.skipIf(not LINKML_INSTALLED, "optional LinkML module is not installed")
     def test_check_termset_wrapper(self):
-        terms = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
+        terms = TermSet(name='example', term_schema_path='tests/unit/example_test_term_set.yaml')
 
         # create children and add parent
         col1 = VectorData(
@@ -290,7 +290,7 @@ def test_check_termset_wrapper(self):
 
     @unittest.skipIf(not LINKML_INSTALLED, "optional LinkML module is not installed")
     def test_add_ref_termset_data(self):
-        terms = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
+        terms = TermSet(name='example', term_schema_path='tests/unit/example_test_term_set.yaml')
         er = HERD()
         em = HERDManagerContainer()
         em.link_resources(er)
@@ -313,7 +313,7 @@ def test_add_ref_termset_data(self):
 
     @unittest.skipIf(not LINKML_INSTALLED, "optional LinkML module is not installed")
     def test_add_ref_termset_attr(self):
-        terms = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
+        terms = TermSet(name='example', term_schema_path='tests/unit/example_test_term_set.yaml')
         er = HERD()
         em = HERDManagerContainer()
         em.link_resources(er)

diff --git a/tests/unit/common/test_table.py b/tests/unit/common/test_table.py
@@ -120,7 +120,7 @@ def test_constructor_all_columns_are_iterators(self):
 
     @unittest.skipIf(not LINKML_INSTALLED, "optional LinkML module is not installed")
     def test_add_col_validate(self):
-        terms = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
+        terms = TermSet(name='example', term_schema_path='tests/unit/example_test_term_set.yaml')
         col1 = VectorData(
             name='Species_1',
             description='...',
@@ -139,7 +139,7 @@ def test_add_col_validate(self):
 
     @unittest.skipIf(not LINKML_INSTALLED, "optional LinkML module is not installed")
     def test_add_col_validate_bad_data(self):
-        terms = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
+        terms = TermSet(name='example', term_schema_path='tests/unit/example_test_term_set.yaml')
         col1 = VectorData(
             name='Species_1',
             description='...',
@@ -154,7 +154,7 @@ def test_add_col_validate_bad_data(self):
 
     @unittest.skipIf(not LINKML_INSTALLED, "optional LinkML module is not installed")
     def test_add_row_validate(self):
-        terms = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
+        terms = TermSet(name='example', term_schema_path='tests/unit/example_test_term_set.yaml')
         col1 = VectorData(
             name='Species_1',
             description='...',
@@ -176,7 +176,7 @@ def test_add_row_validate(self):
 
     @unittest.skipIf(not LINKML_INSTALLED, "optional LinkML module is not installed")
     def test_add_row_validate_bad_data_one_col(self):
-        terms = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
+        terms = TermSet(name='example', term_schema_path='tests/unit/example_test_term_set.yaml')
         col1 = VectorData(
             name='Species_1',
             description='...',
@@ -193,7 +193,7 @@ def test_add_row_validate_bad_data_one_col(self):
 
     @unittest.skipIf(not LINKML_INSTALLED, "optional LinkML module is not installed")
     def test_add_row_validate_bad_data_all_col(self):
-        terms = TermSet(term_schema_path='tests/unit/example_test_term_set.yaml')
+        terms = TermSet(name='example', term_schema_path='tests/unit/example_test_term_set.yaml')
         col1 = VectorData(
             name='Species_1',
             description='...',