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Rework ZarrIO backend/Remove python3.7/Update HDMF and PyNWB min/Upda…
…te workflows (#120) * Both table and dataset of references work * checkpoint * all tests pass * tests pass * ignore warning * clean up * versions * 3.8 min * 3.8 min * remove 3.7 * remove 3.7 * remove 3.7 * remove 3.7 * remove * chckpoint * Update .readthedocs.yaml * Update .readthedocs.yaml * doc build test * sanity check * sanity check doc build * Update .readthedocs.yaml * doc build * build doc * clean up * docs * Update src/hdmf_zarr/backend.py Co-authored-by: Oliver Ruebel <[email protected]> * Update src/hdmf_zarr/backend.py Co-authored-by: Oliver Ruebel <[email protected]> * Update src/hdmf_zarr/backend.py Co-authored-by: Oliver Ruebel <[email protected]> * Update src/hdmf_zarr/backend.py Co-authored-by: Oliver Ruebel <[email protected]> * Update src/hdmf_zarr/zarr_utils.py Co-authored-by: Oliver Ruebel <[email protected]> * class docstrings * flake8/slight change to TableRef * first round clean up for review * Update CHANGELOG.md * clean up * Update requirements.txt * Update setup.py * clean up spacing * source * default * Update src/hdmf_zarr/backend.py Co-authored-by: Oliver Ruebel <[email protected]> * Update CHANGELOG.md Co-authored-by: Oliver Ruebel <[email protected]> * export_source * Update src/hdmf_zarr/backend.py Co-authored-by: Oliver Ruebel <[email protected]> * clean up/adjust resolve_ref * Update storage.rst * note * Update run_all_tests.yml Co-authored-by: Ryan Ly <[email protected]> * Update backend.py Co-authored-by: Ryan Ly <[email protected]> * test format * Update CHANGELOG.md Co-authored-by: Oliver Ruebel <[email protected]> * Update src/hdmf_zarr/backend.py Co-authored-by: Oliver Ruebel <[email protected]> * feedback fix * tests * Update tests/unit/utils.py Co-authored-by: Oliver Ruebel <[email protected]> * flake --------- Co-authored-by: Oliver Ruebel <[email protected]> Co-authored-by: Ryan Ly <[email protected]>
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@@ -62,7 +62,6 @@ body: | |
attributes: | ||
label: Python Version | ||
options: | ||
- "3.7" | ||
- "3.8" | ||
- "3.9" | ||
- "3.10" | ||
|
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@@ -1,6 +1,6 @@ | ||
hdmf==3.5.4 | ||
hdmf==3.9.0 | ||
zarr==2.11.0 | ||
numcodecs==0.9.1 | ||
pynwb==2.3.2 | ||
pynwb==2.5.0 | ||
setuptools | ||
importlib_resources;python_version<'3.9' # Remove when python 3.9 becomes the new minimum |
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# pinned dependencies to reproduce an entire development environment to use HDMF-ZARR | ||
hdmf==3.5.4 | ||
hdmf==3.9.0 | ||
zarr==2.11.0 | ||
pynwb==2.3.2 | ||
numpy==1.21; python_version < "3.8" | ||
numpy==1.23; python_version >= "3.8" | ||
numcodecs==0.10.2; python_version < "3.8" | ||
numcodecs==0.11.0; python_version >= "3.8" | ||
pynwb==2.5.0 | ||
numpy==1.24 | ||
numcodecs==0.11.0 |
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