build doc

docs/gallery/plot_convert_nwb_hdf5.py

@@ -12,6 +12,9 @@
 
 import os
 import shutil
+from pynwb import NWBHDF5IO
+from hdmf_zarr.nwb import NWBZarrIO
+from contextlib import suppress
 
 # Input file to convert
 basedir = "resources"
@@ -38,9 +41,6 @@
 # As this is an NWB file, we here use the :py:class:`pynwb.NWBHDF5IO` backend for reading the file from
 # from HDF5 and use the :py:class:`~hdmf_zarr.nwb.NWBZarrIO` backend to export the file to Zarr.
 
-from pynwb import NWBHDF5IO
-from hdmf_zarr.nwb import NWBZarrIO
-
 with NWBHDF5IO(filename, 'r', load_namespaces=False) as read_io:  # Create HDF5 IO object for read
     with NWBZarrIO(zarr_filename, mode='w') as export_io:         # Create Zarr IO object for write
         export_io.export(src_io=read_io, write_args=dict(link_data=False))   # Export from HDF5 to Zarr
@@ -53,7 +53,6 @@
 #
 # Read the Zarr file back in
 # --------------------------
-#
 
 zr = NWBZarrIO(zarr_filename, 'r')
 zf = zr.read()
@@ -82,7 +81,7 @@
 # ----------------------------------
 #
 # Using the same approach as above, we can now convert our Zarr file back to HDF5.
-try: # TODO: This is a temporary ignore on the convert_dtype exception.
+with suppress(Exception): # TODO: This is a temporary ignore on the convert_dtype exception.
     with NWBZarrIO(zarr_filename, mode='r') as read_io:  # Create Zarr IO object for read
         with NWBHDF5IO(hdf_filename, 'w') as export_io:  # Create HDF5 IO object for write
             export_io.export(src_io=read_io, write_args=dict(link_data=False))  # Export from Zarr to HDF5
@@ -93,9 +92,6 @@
 #
 # Now our file has been converted from HDF5 to Zarr and back again to HDF5.
 # Here we check that we can still read that file.
-
+with suppress(Exception): # TODO: This is a temporary ignore on the convert_dtype exception.
     with NWBHDF5IO(hdf_filename, 'r') as hr:
         hf = hr.read()
-
-except Exception:
-    pass