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eberdan authored Mar 28, 2024
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### Description

**Add more here**
This repository has teaching materials for a **3 hour**, hands-on **Intermediate bash** workshop led at a relaxed pace. Many tools for the analysis of big data require knowledge of the command line, and this workshop will build on the basic skills taught in the **The Foundation - Basic Shell** workshop to teach users basic command line functions such as `grep`, `sed` and `awk` to find and summarize information from large files.

### Learning Objectives

* Recognize basic regex
* Utilize regex to cast a wider next with `grep`, `sed`, and `awk`
* Differentiate between best use cases for `grep`, `sed`, and `awk`
* Implement proper syntax for `grep`, `sed`, and `awk` commands
* Observe the wide range of options for `sed` to perform various tasks
* Identify bioinformatic applications for `grep`, `sed`, and `awk`

> These materials are developed for a trainer-led workshop, but also amenable to self-guided learning.
> These materials are developed for a trainer-led workshop, but are also amenable to self-guided learning.

### Contents

| Lessons | Estimated Duration |
|:------------------------|:----------|
|[Setting up] | 15 min |

|[Setting up](lessons/01_Setting_up.html) | 15 min |
|[Regular Expressions](lessons/02_Regular_expressions.html) | 45 min |
|[Sed](lessons/03_sed.html) | 45 min |
|[Awk](lessons/AWK_module.html)| 75 min |

### Dataset

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