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Update README.md
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bash to shell edits
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eberdan authored Feb 15, 2024
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Expand Up @@ -12,13 +12,13 @@ This repository has teaching materials for a **2-3 hour**, hands-on **Introducti

### Learning Objectives

* Recognize the importance of bash in the analysis of high throughput sequencing (HTS) data
* Recognize the importance of shell in the analysis of high throughput sequencing (HTS) data
* Install and locate the software/tools necessary for accessing the command line
* Describe the organization of the file directory and how to move through it
* Demonstrate different ways to manipulate files, such as moving, copying, and renaming
* Compare different commands for examining small or large files
* Create new files and make edits to existing files with nano
* Contrast shell scripts with direct commands
* Describe the organization of the file directory and how to move through it
* Demonstrate different ways to manipulate files, such as moving, copying, and renaming
* Compare different commands for examining small or large files
* Create new files and make edits to existing files with nano
* Contrast shell scripts with direct commands


> These materials are developed for a trainer-led workshop, but also amenable to self-guided learning.
Expand All @@ -28,7 +28,7 @@ This repository has teaching materials for a **2-3 hour**, hands-on **Introducti

| Lessons | Estimated Duration |
|:------------------------|:----------|
|[Why Bash?]() | 15 min |
|[Why Shell?]() | 15 min |
|[Acessing the Shell](Lesson1_Acesssingtheshell.md) | 15 min |
|[Moving around and basics](Lesson2_basics.md) | 45 min |
|[Creating Files and Searching](Lesson3_creatingfiles.md) | 45 min |
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