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mistrm82 authored Jan 29, 2024
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| Audience | Computational skills required | Duration |
:----------|:----------|:----------|
| Biologists | None | 3-hour workshop (~3 hours of trainer-led time)|
| Biologists | None | 2-3 hour workshop (~3 hours of trainer-led time)|


### Description

This repository has teaching materials for a **3 hour**, hands-on **Introduction to the command-line interface** workshop led at a relaxed pace.
This repository has teaching materials for a **2-3 hour**, hands-on **Introduction to the command-line interface** workshop led at a relaxed pace.

Many data analysis tools and computational resources require users to have a basic working knowledge of the command line interface (also referred to as *UNIX, Linux, bash, shell*). In this workshop participants will learn basic commands for navigating the file system, exploring file contents, and performing basic operations, such as moving, copying, and renaming files/folders.

### Learning Objectives

* **Recognize the importance of bash in the analysis of high throughput sequencing (HTS) data**
* **Install and locate the programs necessary for accessing the command line**
* **Describe the organization of the file directory and how to move through it**
* **Demonstrate different ways to manipulate files, such as moving, copying, and renaming**
* **Write and edit new or existing files with nano**
* Recognize the importance of bash in the analysis of high throughput sequencing (HTS) data
* Install and locate the software/tools necessary for accessing the command line
* Describe the organization of the file directory and how to move through it
* Demonstrate different ways to manipulate files, such as moving, copying, and renaming
* Create existing files with nano, and make edits to existing files
* Contrast shell scripts with direct commands
* Describe the different parts of a shell script?

*
* **Select the proper command for examining small or large files**
* **Contrast shell scripts with direct commands and explain the different parts of a shell script**
*

> These materials are developed for a trainer-led workshop, but also amenable to self-guided learning.
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