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Update intro.md
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update LOs
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eberdan authored Jan 26, 2024
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### Learning Objectives

* **Accessing the bash shell:** Understanding how to start up the command-line interface
* **Navigating the file directory:** Recognizing the organization of the file directory and exploring the folders/files
* **Performing file operations:** Understanding ways to manipulate files, such as moving, copying, and renaming files
* **Exploring file contents:** Learning how to look at the contents of files
* **Finding help:** Utilizing resources to determine how to specify desired commands
* **Searching files:** Practicing searching for patterns within files
* **Redirecting output:** Using redirection operators to create new files, append contents to an already existing file, and combining commands together
* **Recognize the importance of bash in the analysis of high throughput sequencing (HTS) data**
* **Install and locate the programs necessary for accessing the command line**
* **Describe the organization of the file directory and how to move through it**
* **Demonstrate different ways to manipulate files, such as moving, copying, and renaming**
* **Write and edit new or existing files with nano**
* **Select the proper command for examining small or large files**
* **Contrast shell scripts with direct commands and explain the different parts of a shell script**

> These materials are developed for a trainer-led workshop, but also amenable to self-guided learning.
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