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napari is partially working! And new functions

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@hanjinliu hanjinliu released this 22 Apr 13:42
· 1050 commits to main since this release

News

  • ip.window will be imported if possible, and this object makes it easy to visualize image with napari.
  • curve_fit is working in PropArray, which can run scipy.optimize.curve_fit along any axis.
  • specify is totally modified and now it is very useful for labeling in square or circular shape.
  • melt is working in PropArray, which makes it easier to iterate along all the labels.

Improvements

  • Some of filter functions are implemented using functions provided in scipy.ndimage rather than skimage because they are much faster.
  • For images with size less than 10^7 pixels, parallel do not choose multiprocessing because it might be slower.
  • Scales of axes can be set with set_scale so that you don't need to specify pixel size in such as hessian_eigval.
  • peak_local_max takes percentile as an argument instead of absolute threshold because it is more useful.

Bug Fix

  • In some functions update=True did not work
  • split did split the image itself but did not split labels.

Important Changes

  • __getitem__ is zero-start now, like in napari.
  • All the plugin is deleted and moved into ImgArray methods.