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Bug fix and new methods

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@hanjinliu hanjinliu released this 10 Apr 11:30
· 1121 commits to main since this release
1a7f7dd

Bug Fix

  • gaussian_filter did not work in previous version because of slightly different implementation of other running-kernel filters.
  • impy.zeros did not work because I forgot adding it in __init__.py.
  • clip_outliers and rescale_intensity did not work in some cases because of bad implementation.

New Methods

  • gaussfit_particle
  • structure_tensor_eigval
  • structure_tensor_eig
  • dog_filter
  • peak_local_max

Changes

  • Following methods now support new keyword argument update : bool -- mean_filter, median_filter, gaussian_filter, tophat, erosion, dilation, opening, closing. If update=True, the original image is updated just like filters in ImageJ.
  • Gaussian functions are integrated in gauss.py and now it can be utilized for generating images and fitting to single molecules.