update for v2.1.0

hanjinliu · Jun 6, 2022 · 699c7c8 · 699c7c8
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diff --git a/docs/.buildinfo b/docs/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
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+config: 73ed86762e5a4a9dd35bc4ffbb08a24e
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/.doctrees/apidoc/impy.arrays.doctree b/docs/.doctrees/apidoc/impy.arrays.doctree
diff --git a/docs/.doctrees/environment.pickle b/docs/.doctrees/environment.pickle
diff --git a/docs/.doctrees/tutorial.doctree b/docs/.doctrees/tutorial.doctree
diff --git a/docs/_modules/impy/arrays/imgarray.html b/docs/_modules/impy/arrays/imgarray.html
diff --git a/docs/_modules/impy/arrays/labeledarray.html b/docs/_modules/impy/arrays/labeledarray.html
diff --git a/docs/_modules/impy/arrays/phasearray.html b/docs/_modules/impy/arrays/phasearray.html
diff --git a/docs/_modules/index.html b/docs/_modules/index.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; impy 2.1.0.alpha documentation</title>
+  <title>Overview: module code &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -27,7 +27,7 @@
             <a href="../index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/docs/_sources/tutorial.rst.txt b/docs/_sources/tutorial.rst.txt
@@ -267,7 +267,7 @@ You can check its size in GB:
 
 .. code-block:: python
 
-    img.gb
+    img.GB
 
 .. code-block::
 

diff --git a/docs/_sources/tutorial_axes.rst.txt b/docs/_sources/tutorial_axes.rst.txt
@@ -271,4 +271,4 @@ possible.
         y = ip.random.random((4, 5, 7), axes="ntx")
         out = ip.broadcast_arrays(y, x)
         out[0].shape  # AxesShape(n=4, t=5, z=6, x=7)
-        out[1].shape  # AxesShape(n=4, t=5, z=6, x=7)
+        out[1].shape  # AxesShape(n=4, t=5, z=6, x=7)
diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '2.1.0.alpha',
+    VERSION: '2.1.0',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/api.html b/docs/api.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>API References &mdash; impy 2.1.0.alpha documentation</title>
+  <title>API References &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -30,7 +30,7 @@
             <a href="index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/apidoc/impy.arrays.bases.html b/docs/apidoc/impy.arrays.bases.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>impy.arrays.bases package &mdash; impy 2.1.0.alpha documentation</title>
+  <title>impy.arrays.bases package &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -42,6 +42,7 @@
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial.html">Tutorial</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../tutorial_axes.html">Axes in impy</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_cmd.html">Command Line Usage</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API References</a></li>
 </ul>

diff --git a/docs/apidoc/impy.arrays.html b/docs/apidoc/impy.arrays.html
diff --git a/docs/apidoc/impy.axes.html b/docs/apidoc/impy.axes.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>impy.axes package &mdash; impy 2.1.0.alpha documentation</title>
+  <title>impy.axes package &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -42,6 +42,7 @@
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial.html">Tutorial</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../tutorial_axes.html">Axes in impy</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_cmd.html">Command Line Usage</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API References</a></li>
 </ul>

diff --git a/docs/apidoc/impy.frame.html b/docs/apidoc/impy.frame.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>impy.frame package &mdash; impy 2.1.0.alpha documentation</title>
+  <title>impy.frame package &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -42,6 +42,7 @@
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial.html">Tutorial</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../tutorial_axes.html">Axes in impy</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_cmd.html">Command Line Usage</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API References</a></li>
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diff --git a/docs/apidoc/impy.html b/docs/apidoc/impy.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>impy package &mdash; impy 2.1.0.alpha documentation</title>
+  <title>impy package &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -31,7 +31,7 @@
             <a href="../index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -43,6 +43,7 @@
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial.html">Tutorial</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../tutorial_axes.html">Axes in impy</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_cmd.html">Command Line Usage</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API References</a></li>
 </ul>

diff --git a/docs/apidoc/impy.utils.html b/docs/apidoc/impy.utils.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>impy.utils package &mdash; impy 2.1.0.alpha documentation</title>
+  <title>impy.utils package &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -42,6 +42,7 @@
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial.html">Tutorial</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../tutorial_axes.html">Axes in impy</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_cmd.html">Command Line Usage</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API References</a></li>
 </ul>

diff --git a/docs/apidoc/impy.viewer.html b/docs/apidoc/impy.viewer.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>impy.viewer package &mdash; impy 2.1.0.alpha documentation</title>
+  <title>impy.viewer package &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -29,7 +29,7 @@
             <a href="../index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -41,6 +41,7 @@
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial.html">Tutorial</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../tutorial_axes.html">Axes in impy</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_cmd.html">Command Line Usage</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API References</a></li>
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diff --git a/docs/apidoc/modules.html b/docs/apidoc/modules.html
@@ -4,7 +4,7 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>impy &mdash; impy 2.1.0.alpha documentation</title>
+  <title>impy &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -28,7 +28,7 @@
             <a href="../index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
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 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
@@ -40,6 +40,7 @@
         </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
               <ul>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial.html">Tutorial</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../tutorial_axes.html">Axes in impy</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_cmd.html">Command Line Usage</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../api.html">API References</a></li>
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diff --git a/docs/genindex.html b/docs/genindex.html
@@ -3,7 +3,7 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Index &mdash; impy 2.1.0.alpha documentation</title>
+  <title>Index &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -27,7 +27,7 @@
             <a href="index.html" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
@@ -237,6 +237,8 @@ <h2 id="B">B</h2>
       </ul></li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.phasearray.PhaseArray.border">border (impy.arrays.phasearray.PhaseArray attribute)</a>
+</li>
       <li><a href="apidoc/impy.html#impy.binder.bind.bound">bound (impy.binder.bind attribute)</a>
 </li>
       <li><a href="apidoc/impy.html#impy.core.broadcast_arrays">broadcast_arrays() (in module impy.core)</a>
@@ -808,8 +810,6 @@ <h2 id="I">I</h2>
 </li>
       </ul></li>
       <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.LabeledArray.imshow_comparewith">imshow_comparewith() (impy.arrays.labeledarray.LabeledArray method)</a>
-</li>
-      <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.LabeledArray.imshow_label">imshow_label() (impy.arrays.labeledarray.LabeledArray method)</a>
 </li>
       <li><a href="apidoc/impy.arrays.html#impy.arrays.label.Label.increment">increment() (impy.arrays.label.Label method)</a>
 </li>
@@ -911,7 +911,7 @@ <h2 id="M">M</h2>
 </li>
       <li><a href="apidoc/impy.html#impy.correlation.manders_coloc">manders_coloc() (in module impy.correlation)</a>
 </li>
-      <li><a href="apidoc/impy.arrays.html#impy.arrays.imgarray.ImgArray.map_coordinates">map_coordinates() (impy.arrays.imgarray.ImgArray method)</a>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.LabeledArray.map_coordinates">map_coordinates() (impy.arrays.labeledarray.LabeledArray method)</a>
 
       <ul>
         <li><a href="apidoc/impy.arrays.html#impy.arrays.phasearray.PhaseArray.map_coordinates">(impy.arrays.phasearray.PhaseArray method)</a>
@@ -1106,7 +1106,7 @@ <h2 id="P">P</h2>
 </li>
       <li><a href="apidoc/impy.frame.html#impy.frame.frames.PathFrame">PathFrame (class in impy.frame.frames)</a>
 </li>
-      <li><a href="apidoc/impy.arrays.html#impy.arrays.imgarray.ImgArray.pathprops">pathprops() (impy.arrays.imgarray.ImgArray method)</a>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.LabeledArray.pathprops">pathprops() (impy.arrays.labeledarray.LabeledArray method)</a>
 </li>
       <li><a href="apidoc/impy.html#impy.correlation.pcc_landscape">pcc_landscape() (in module impy.correlation)</a>
 </li>
@@ -1126,7 +1126,7 @@ <h2 id="P">P</h2>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="apidoc/impy.arrays.html#impy.arrays.specials.PropArray.plot">plot() (impy.arrays.specials.PropArray method)</a>
 </li>
-      <li><a href="apidoc/impy.arrays.html#impy.arrays.imgarray.ImgArray.pointprops">pointprops() (impy.arrays.imgarray.ImgArray method)</a>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.LabeledArray.pointprops">pointprops() (impy.arrays.labeledarray.LabeledArray method)</a>
 </li>
       <li><a href="apidoc/impy.html#impy.correlation.polar_pcc_maximum">polar_pcc_maximum() (in module impy.correlation)</a>
 </li>
@@ -1208,7 +1208,7 @@ <h2 id="R">R</h2>
 </li>
       <li><a href="apidoc/impy.arrays.bases.html#impy.arrays.bases.metaarray.MetaArray.reshape">reshape() (impy.arrays.bases.metaarray.MetaArray method)</a>
 </li>
-      <li><a href="apidoc/impy.arrays.html#impy.arrays.imgarray.ImgArray.reslice">reslice() (impy.arrays.imgarray.ImgArray method)</a>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.LabeledArray.reslice">reslice() (impy.arrays.labeledarray.LabeledArray method)</a>
 
       <ul>
         <li><a href="apidoc/impy.arrays.html#impy.arrays.phasearray.PhaseArray.reslice">(impy.arrays.phasearray.PhaseArray method)</a>
@@ -1232,7 +1232,7 @@ <h2 id="S">S</h2>
 </li>
       <li><a href="apidoc/impy.html#impy.core.sample_image">sample_image() (in module impy.core)</a>
 </li>
-      <li><a href="apidoc/impy.arrays.html#impy.arrays.imgarray.SegmentedLine.sample_points">sample_points() (impy.arrays.imgarray.SegmentedLine method)</a>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.SegmentedLine.sample_points">sample_points() (impy.arrays.labeledarray.SegmentedLine method)</a>
 </li>
       <li><a href="apidoc/impy.arrays.html#impy.arrays.axesmixin.AxesMixin.scale">scale (impy.arrays.axesmixin.AxesMixin property)</a>
 
@@ -1246,7 +1246,7 @@ <h2 id="S">S</h2>
       </ul></li>
       <li><a href="apidoc/impy.arrays.html#impy.arrays.axesmixin.AxesMixin.scale_unit">scale_unit (impy.arrays.axesmixin.AxesMixin property)</a>
 </li>
-      <li><a href="apidoc/impy.arrays.html#impy.arrays.imgarray.SegmentedLine">SegmentedLine (class in impy.arrays.imgarray)</a>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.SegmentedLine">SegmentedLine (class in impy.arrays.labeledarray)</a>
 </li>
       <li><a href="apidoc/impy.viewer.html#impy.viewer.viewer.napariViewers.selection">selection (impy.viewer.viewer.napariViewers property)</a>
 </li>
@@ -1320,7 +1320,7 @@ <h2 id="S">S</h2>
 </li>
       <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.LabeledArray.specify">specify() (impy.arrays.labeledarray.LabeledArray method)</a>
 </li>
-      <li><a href="apidoc/impy.arrays.html#impy.arrays.imgarray.ImgArray.spline_filter">spline_filter() (impy.arrays.imgarray.ImgArray method)</a>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.labeledarray.LabeledArray.spline_filter">spline_filter() (impy.arrays.labeledarray.LabeledArray method)</a>
 
       <ul>
         <li><a href="apidoc/impy.arrays.html#impy.arrays.lazy.LazyImgArray.spline_filter">(impy.arrays.lazy.LazyImgArray method)</a>
@@ -1405,6 +1405,10 @@ <h2 id="T">T</h2>
 
 <h2 id="U">U</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="apidoc/impy.arrays.html#impy.arrays.phasearray.PhaseArray.unit">unit (impy.arrays.phasearray.PhaseArray attribute)</a>
+</li>
+  </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="apidoc/impy.arrays.html#impy.arrays.imgarray.ImgArray.unmix">unmix() (impy.arrays.imgarray.ImgArray method)</a>
 </li>

diff --git a/docs/index.html b/docs/index.html
@@ -4,7 +4,7 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>impy &mdash; impy 2.1.0.alpha documentation</title>
+  <title>impy &mdash; impy 2.1.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
   <!--[if lt IE 9]>
@@ -29,7 +29,7 @@
             <a href="#" class="icon icon-home"> impy
           </a>
               <div class="version">
-                2.1.0.alpha
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/objects.inv b/docs/objects.inv
-Original file line number
+Diff line change
@@ Expand Up / @@ -267,7 +267,7 @@ You can check its size in GB: @@
     .. code-block:: python
-        img.gb
+        img.GB
     .. code-block::
@@ Expand Down @@