Skip to content

Commit

Permalink
update docs
Browse files Browse the repository at this point in the history
  • Loading branch information
hanjinliu committed Jan 25, 2022
1 parent e3bf1b8 commit 011e296
Show file tree
Hide file tree
Showing 24 changed files with 94 additions and 116 deletions.
2 changes: 1 addition & 1 deletion docs/.buildinfo
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 4cceaf713fd3e950f9fba85eb852f32b
config: e19337f968ebb208f3d9eb69a3546e77
tags: 645f666f9bcd5a90fca523b33c5a78b7
Binary file modified docs/.doctrees/environment.pickle
Binary file not shown.
Binary file modified docs/.doctrees/impy.arrays.doctree
Binary file not shown.
100 changes: 55 additions & 45 deletions docs/_modules/impy/arrays/lazy.html

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions docs/_modules/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &mdash; impy 1.25.0 documentation</title>
<title>Overview: module code &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -27,7 +27,7 @@
<a href="../index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
Expand Down
2 changes: 1 addition & 1 deletion docs/_static/documentation_options.js
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
var DOCUMENTATION_OPTIONS = {
URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
VERSION: '1.25.0',
VERSION: '1.25.1',
LANGUAGE: 'None',
COLLAPSE_INDEX: false,
BUILDER: 'html',
Expand Down
4 changes: 2 additions & 2 deletions docs/api.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>API References &mdash; impy 1.25.0 documentation</title>
<title>API References &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
12 changes: 4 additions & 8 deletions docs/genindex.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Index &mdash; impy 1.25.0 documentation</title>
<title>Index &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -27,7 +27,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down Expand Up @@ -1554,11 +1554,11 @@ <h2 id="R">R</h2>
<li><a href="impy.arrays.html#impy.arrays.imgarray.ImgArray.remove_fine_objects">remove_fine_objects() (impy.arrays.imgarray.ImgArray method)</a>
</li>
<li><a href="impy.arrays.html#impy.arrays.imgarray.ImgArray.remove_large_objects">remove_large_objects() (impy.arrays.imgarray.ImgArray method)</a>
</li>
<li><a href="impy.arrays.html#impy.arrays.imgarray.ImgArray.remove_skeleton_structure">remove_skeleton_structure() (impy.arrays.imgarray.ImgArray method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="impy.arrays.html#impy.arrays.imgarray.ImgArray.remove_skeleton_structure">remove_skeleton_structure() (impy.arrays.imgarray.ImgArray method)</a>
</li>
<li><a href="impy.html#impy.axes.Axes.replace">replace() (impy.axes.Axes method)</a>

<ul>
Expand Down Expand Up @@ -1604,11 +1604,7 @@ <h2 id="R">R</h2>
<li><a href="impy.arrays.html#impy.arrays.imgarray.ImgArray.rotate">rotate() (impy.arrays.imgarray.ImgArray method)</a>
</li>
<li><a href="impy.arrays.html#impy.arrays.labeledarray.LabeledArray.rotated_crop">rotated_crop() (impy.arrays.labeledarray.LabeledArray method)</a>

<ul>
<li><a href="impy.arrays.html#impy.arrays.lazy.LazyImgArray.rotated_crop">(impy.arrays.lazy.LazyImgArray method)</a>
</li>
</ul></li>
<li><a href="impy.viewer.widgets.html#impy.viewer.widgets.gui.Rotator">Rotator (class in impy.viewer.widgets.gui)</a>
</li>
<li><a href="impy.viewer.widgets.html#impy.viewer.widgets.dialog.DuplicateDialog.run">run() (impy.viewer.widgets.dialog.DuplicateDialog method)</a>
Expand Down
4 changes: 2 additions & 2 deletions docs/impy.arrays.bases.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>impy.arrays.bases package &mdash; impy 1.25.0 documentation</title>
<title>impy.arrays.bases package &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
32 changes: 2 additions & 30 deletions docs/impy.arrays.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>impy.arrays package &mdash; impy 1.25.0 documentation</title>
<title>impy.arrays package &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -31,7 +31,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down Expand Up @@ -4670,34 +4670,6 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
again.</p>
</dd></dl>

<dl class="py method">
<dt class="sig sig-object py" id="impy.arrays.lazy.LazyImgArray.rotated_crop">
<span class="sig-name descname"><span class="pre">rotated_crop</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">origin</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dst1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dst2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dims</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">2</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference internal" href="#impy.arrays.lazy.LazyImgArray" title="impy.arrays.lazy.LazyImgArray"><span class="pre">impy.arrays.lazy.LazyImgArray</span></a></span></span><a class="reference internal" href="_modules/impy/arrays/lazy.html#LazyImgArray.rotated_crop"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#impy.arrays.lazy.LazyImgArray.rotated_crop" title="Permalink to this definition">¶</a></dt>
<dd><p>Copy of LabeledArray.rotated_crop. This function returns the same result but the value is evaluated lazily as an dask array.</p>
<p>Crop the image at four courners of an rotated rectangle. Currently only supports rotation within
yx-plane. An rotated rectangle is specified with positions of a origin and two destinations <cite>dst1</cite>
and <cite>dst2</cite>, i.e., vectors (dst1-origin) and (dst2-origin) represent a rotated rectangle. Let
origin be the origin of a xy-plane, the rotation direction from dst1 to dst2 must be counter-
clockwise, or the cropped image will be reversed.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>origin</strong> (<em>(</em><em>float</em><em>, </em><em>float</em><em>)</em>) – </p></li>
<li><p><strong>dst1</strong> (<em>(</em><em>float</em><em>, </em><em>float</em><em>)</em>) – </p></li>
<li><p><strong>dst2</strong> (<em>(</em><em>float</em><em>, </em><em>float</em><em>)</em>) – </p></li>
<li><p><strong>dims</strong> (<em>str</em><em> or </em><em>int</em><em>, </em><em>optional</em>) – Spatial dimensions. If string is given, each symbol is interpeted as an axis name of spatial dimensions. If an integer is given, it is interpreted as the number of spatial dimensions.
For instance, <code class="docutils literal notranslate"><span class="pre">dims=&quot;yx&quot;</span></code> means axes <code class="docutils literal notranslate"><span class="pre">&quot;y&quot;</span></code> and <code class="docutils literal notranslate"><span class="pre">&quot;x&quot;</span></code> are spatial dimensions and function is applied to other axes, say, <code class="docutils literal notranslate"><span class="pre">&quot;t&quot;</span></code> and/or <code class="docutils literal notranslate"><span class="pre">&quot;c&quot;</span></code>. <code class="docutils literal notranslate"><span class="pre">dims=3</span></code> is equivalent to <code class="docutils literal notranslate"><span class="pre">dims=&quot;zyx&quot;</span></code>.</p></li>
</ul>
</dd>
<dt class="field-even">Returns</dt>
<dd class="field-even"><p>Cropped array.</p>
</dd>
<dt class="field-odd">Return type</dt>
<dd class="field-odd"><p><a class="reference internal" href="#impy.arrays.lazy.LazyImgArray" title="impy.arrays.lazy.LazyImgArray">LazyImgArray</a></p>
</dd>
</dl>
</dd></dl>

<dl class="py property">
<dt class="sig sig-object py" id="impy.arrays.lazy.LazyImgArray.shape">
<em class="property"><span class="pre">property</span> </em><span class="sig-name descname"><span class="pre">shape</span></span><a class="headerlink" href="#impy.arrays.lazy.LazyImgArray.shape" title="Permalink to this definition">¶</a></dt>
Expand Down
4 changes: 2 additions & 2 deletions docs/impy.frame.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>impy.frame package &mdash; impy 1.25.0 documentation</title>
<title>impy.frame package &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/impy.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>impy package &mdash; impy 1.25.0 documentation</title>
<title>impy package &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -31,7 +31,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/impy.utils.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>impy.utils package &mdash; impy 1.25.0 documentation</title>
<title>impy.utils package &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/impy.viewer.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>impy.viewer package &mdash; impy 1.25.0 documentation</title>
<title>impy.viewer package &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/impy.viewer.widgets.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>impy.viewer.widgets package &mdash; impy 1.25.0 documentation</title>
<title>impy.viewer.widgets package &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -29,7 +29,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Welcome to impy’s documentation! &mdash; impy 1.25.0 documentation</title>
<title>Welcome to impy’s documentation! &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -29,7 +29,7 @@
<a href="#" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/modules.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>impy &mdash; impy 1.25.0 documentation</title>
<title>impy &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -28,7 +28,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
Binary file modified docs/objects.inv
Binary file not shown.
4 changes: 2 additions & 2 deletions docs/py-modindex.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Python Module Index &mdash; impy 1.25.0 documentation</title>
<title>Python Module Index &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/search.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Search &mdash; impy 1.25.0 documentation</title>
<title>Search &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />

Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="#" method="get">
Expand Down
2 changes: 1 addition & 1 deletion docs/searchindex.js

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions docs/tutorial.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Tutorial &mdash; impy 1.25.0 documentation</title>
<title>Tutorial &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/tutorial_cmd.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Command Line Usage &mdash; impy 1.25.0 documentation</title>
<title>Command Line Usage &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down
4 changes: 2 additions & 2 deletions docs/tutorial_viewer.html
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />

<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Viewer Tutorial &mdash; impy 1.25.0 documentation</title>
<title>Viewer Tutorial &mdash; impy 1.25.1 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
Expand All @@ -30,7 +30,7 @@
<a href="index.html" class="icon icon-home"> impy
</a>
<div class="version">
1.25.0
1.25.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
Expand Down

0 comments on commit 011e296

Please sign in to comment.