Updated publications and group members

haddocking · Oct 20, 2024 · 3f59035 · 3f59035
1 parent 400172d
commit 3f59035
Show file tree

Hide file tree

Showing 3 changed files with 13 additions and 15 deletions.
diff --git a/_data/alumni.yml b/_data/alumni.yml
@@ -19,6 +19,11 @@
     current: 'Oregon State University, Corvallis OR, USA'
     status: visiting-professor
 
+-   name: Vlad Cojocaru
+    url: https://starubb.institute.ubbcluj.ro/en/member/cojocaru-vlad-3
+    current: 'STAR-UBB Institute, Babeș-Bolyai University, Cluj-Napoca, Romania'
+    status: Senior Researcher / Data Scientist
+
 -   name: João Teixeira
     current: 'University of Padova, Italy'
     url: https://fuxreiterlab.github.io/index.html
@@ -49,6 +54,9 @@
     current: 'Boehringer Ingelheim, Vienna, Austria'
     status: 'postdoc'
 
+-   name: Charlotte van Noort
+    status: Ph.D Candidate
+
 -   name: Jorge Roel
     url: https://www.ibmb.csic.es/en/department-of-structural-biology-dsb/protein-design-and-modeling
     current: 'IBMB, Barcelona, Spain'
@@ -403,4 +411,6 @@
 -   name: Tineke Kadijk
     status: student
 
+-   name:  Joe Zhang
+    status: student
 
diff --git a/_data/members.yml b/_data/members.yml
@@ -7,10 +7,6 @@
     position: IT-Researcher (Software Development and Operations)
     avatar: /images/people/Rodrigo.jpg
 
--   name: Vlad Cojocaru
-    position: Senior Researcher / Data Scientist
-    avatar: /images/people/Vlad-Cojocaru.jpg
-
 -   name: Marco Giulini
     position: Postdoctoral Researcher
     avatar: /images/people/Marco-Giulini.jpeg
@@ -27,10 +23,6 @@
     position: Postdoctoral Researcher
     avatar: /images/people/Anna-Kravchenko.jpg
 
--   name: Charlotte van Noort
-    position: Ph.D Candidate
-    avatar: /images/people/Charlotte.jpg
-
 -   name: Xiaotong Xu
     position: Ph.D Candidate
     avatar: /images/people/Xiaotong-Xu.jpg
@@ -43,7 +35,3 @@
     position: M.Sc Student
     avatar: /images/people/Miguel-Sanchez.jpg
 
--   name:  Joe Zhang
-    position: M.Sc Student
-    avatar: /images/people/Joe-Zhang.jpg
-
diff --git a/publications/index.md b/publications/index.md
@@ -12,11 +12,11 @@ Jimenez-Garcia, Z. Jandova, P.I. Koukos, C. van Noort, J.M. . Teixeira, S.C. van
 
 * X. Xu and **A.M.J.J. Bonvin** [Ranking protein-protein models with large language models and graph neural networks](https://arxiv.org/abs/2407.16375). _arXiv_:2407.16375 (2024).
 
-* G. Bellinzona, D. Sassera and **A.M.J.J. Bonvin**. [Accelerating Protein-Protein Interaction screens with reduced AlphaFold-Multimer sampling](https://www.biorxiv.org/content/10.1101/2024.06.07.597882v2) _BioRXiv_ 10.1101/2024.06.07.597882 (2024).
-
 * A. Basciu, M. Athar, H. Kurt, C. Neville, G. Malloci, F. Muredda, A. Bosin, P. Ruggerone, **A.M.J.J. Bonvin** and A.V. Vargiu. [Predicting binding events in very flexible, allosteric, multi-domain proteins](https://doi.org/10.1101/2024.06.02.597018). _BioRXiv._ 10.1101/2024.06.02.597018 (2024).
 
-* A. Ranaudo, M. Giulini, A. Pelissou Ayuso and **A.M.J.J. Bonvin**. [Modelling Protein-Glycan Interactions with HADDOCK](https://doi.org/10.1101/2024.07.31.605986). _J. Chem. Inf. Mod._ In press (2024). [BioRXiv](https://doi.org/10.1101/2024.07.31.605986)
+* G. Bellinzona, D. Sassera and **A.M.J.J. Bonvin**. [Accelerating Protein-Protein Interaction screens with reduced AlphaFold-Multimer sampling](https://doi.org/10.1093/bioadv/vbae153) _Bioinformatics Advances_ vbae153 (2024).
+
+* A. Ranaudo, M. Giulini, A. Pelissou Ayuso and **A.M.J.J. Bonvin**. [Modelling Protein-Glycan Interactions with HADDOCK](https://doi.org/10.1101/2024.07.31.605986). _J. Chem. Inf. Mod._ *64*, 7816–7825 (2024).
 
 * M. Giulini, C. Schneider, D. Cutting, N. Desai, C. Deane and **A.M.J.J. Bonvin**. [Towards the accurate modelling of antibody-antigen complexes from sequence using machine learning and information-driven docking](https://doi.org/10.1093/bioinformatics/btae583). _Bioinformatics_ Advanced Online Publication, 10.1093/bioinformatics/btae583 (2024).[BioRxiv](https://www.biorxiv.org/content/10.1101/2023.11.17.567543v1)