Harmonizome

This repository contains the source code for the Harmonizome.

Funding

• BD2K-LINCS Data Coordination and Integration Center
• Illuminating the Druggable Genome, Knowledge Management Center

Citation

Please acknowledge the Harmonizome in your publications by citing the following reference:

Rouillard AD, Gundersen GW, Fernandez NF, Wang Z, Monteiro CD, McDermott MG, Ma'ayan A. The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. Database (Oxford). 2016 Jul 3;2016. pii: baw100.

Ma'ayan Lab developers:

To use this project, you must have two files containing sensitive data:

hibernate.properties: This should have three lines:

hibernate.connection.username=<DB_USERNAME>
hibernate.connection.password=<DB_PASSWORD>
hibernate.connection.url=<DB_CONNECTION_STRING>

email.properties: This should have at least four lines:

email.username=<HARMONIZOME_EMAIL_ADDRESS>
email.password=<HARMONIZOME_EMAIL_PASSWORD>
email.avi=<AVIS_EMAIL_ADDRESS>
email.<CURRENT_DEVELOPER_NAME>=<CURRENT_DEVELOPER_EMAIL>