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v1.3 docs
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gwct committed Feb 14, 2020
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4 changes: 2 additions & 2 deletions docs/about.html
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<li class="pure-menu-item"><a href="index.html" class="nav_link">Home</a></li>
<li class="pure-menu-item"><a href="#" class="nav_link" id="active">About</a></li>
<li class="pure-menu-item"><a href="readme.html" class="nav_link">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
Expand Down Expand Up @@ -300,7 +300,7 @@ <h3>Step 5: Aggregating scores</h3>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:42 MST</center>
Page built: 02/14/2020 15:29:09 MST</center>
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</div>
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4 changes: 2 additions & 2 deletions docs/example1.html
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<li class="pure-menu-item"><a href="index.html" class="nav_link">Home</a></li>
<li class="pure-menu-item"><a href="about.html" class="nav_link">About</a></li>
<li class="pure-menu-item"><a href="readme.html" class="nav_link">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
Expand Down Expand Up @@ -290,7 +290,7 @@ <h3>Outputs</h3>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:43 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
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4 changes: 2 additions & 2 deletions docs/example2.html
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<li class="pure-menu-item"><a href="index.html" class="nav_link">Home</a></li>
<li class="pure-menu-item"><a href="about.html" class="nav_link">About</a></li>
<li class="pure-menu-item"><a href="readme.html" class="nav_link">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
Expand Down Expand Up @@ -150,7 +150,7 @@ <h3>Outputs</h3>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:43 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
</div>
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4 changes: 2 additions & 2 deletions docs/example3.html
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<li class="pure-menu-item"><a href="index.html" class="nav_link">Home</a></li>
<li class="pure-menu-item"><a href="about.html" class="nav_link">About</a></li>
<li class="pure-menu-item"><a href="readme.html" class="nav_link">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
Expand Down Expand Up @@ -137,7 +137,7 @@ <h3>Outputs</h3>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:43 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
</div>
</div>
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6 changes: 3 additions & 3 deletions docs/index.html
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<li class="pure-menu-item"><a href="#" class="nav_link" id="active">Home</a></li>
<li class="pure-menu-item"><a href="about.html" class="nav_link">About</a></li>
<li class="pure-menu-item"><a href="readme.html" class="nav_link">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
Expand Down Expand Up @@ -84,7 +84,7 @@ <h1>GRAMPA: Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Anal
<div id="buttons_container">
<a class="button-secondary pure-button" id="install_btn" href="about.html">About &raquo;</a><span id="buffer"></span>
<a class="button-secondary pure-button" id="install_btn" href="readme.html">README &raquo;</a><span id="buffer"></span>
<a class="button-secondary pure-button" id="install_btn" href="https://github.com/gwct/grampa" target="_blank">Download &raquo;</a>
<a class="button-secondary pure-button" id="install_btn" href="https://github.com/gwct/grampa/releases/latest" target="_blank">Download &raquo;</a>
</div>
</div>
</div>
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<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:42 MST</center>
Page built: 02/14/2020 15:29:09 MST</center>
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4 changes: 2 additions & 2 deletions docs/links.html
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<li class="pure-menu-item"><a href="index.html" class="nav_link">Home</a></li>
<li class="pure-menu-item"><a href="about.html" class="nav_link">About</a></li>
<li class="pure-menu-item"><a href="readme.html" class="nav_link">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
Expand Down Expand Up @@ -112,7 +112,7 @@ <h3>Previous versions of GRAMPA</h3>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:45 MST</center>
Page built: 02/14/2020 15:29:11 MST</center>
</div>
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4 changes: 2 additions & 2 deletions docs/performance.html
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<li class="pure-menu-item"><a href="index.html" class="nav_link">Home</a></li>
<li class="pure-menu-item"><a href="about.html" class="nav_link">About</a></li>
<li class="pure-menu-item"><a href="readme.html" class="nav_link">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
Expand Down Expand Up @@ -126,7 +126,7 @@ <h2>Comparisons between operating systems</h2>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:45 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
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4 changes: 2 additions & 2 deletions docs/readme.html
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<li class="pure-menu-item"><a href="index.html" class="nav_link">Home</a></li>
<li class="pure-menu-item"><a href="about.html" class="nav_link">About</a></li>
<li class="pure-menu-item"><a href="#" class="nav_link" id="active">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
Expand Down Expand Up @@ -482,7 +482,7 @@ <h4>If <code class="cb">-h1</code> and <code class="cb">-h2</code> are not speci
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 02/14/2020 15:19:17 MST</center>
Page built: 02/14/2020 15:29:09 MST</center>
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2 changes: 1 addition & 1 deletion docs/results/wheat/wheat_ab.html
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Expand Up @@ -171,7 +171,7 @@ <h2>Known wheat phylogeny</h2>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:44 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
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2 changes: 1 addition & 1 deletion docs/results/wheat/wheat_ad.html
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Expand Up @@ -171,7 +171,7 @@ <h2>Known wheat phylogeny</h2>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:44 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
</div>
</div>
</div>
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2 changes: 1 addition & 1 deletion docs/results/wheat/wheat_all.html
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Expand Up @@ -180,7 +180,7 @@ <h2>Known wheat phylogeny</h2>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:44 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
</div>
</div>
</div>
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2 changes: 1 addition & 1 deletion docs/results/wheat/wheat_bd.html
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Expand Up @@ -171,7 +171,7 @@ <h2>Known wheat phylogeny</h2>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:44 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
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</div>
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2 changes: 1 addition & 1 deletion docs/results/yeast/yeast.html
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Expand Up @@ -156,7 +156,7 @@ <h2>Score plot</h2>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:43 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
</div>
</div>
</div>
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2 changes: 1 addition & 1 deletion docs/results/yeast/yeast_ohno.html
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Expand Up @@ -156,7 +156,7 @@ <h2>Score plot</h2>
<div class="pure-u-1">
<div id="footer_text">
<center>Site designed and maintained by <a href="https://gwct.github.io/" target="_blank">Gregg Thomas</a> | <a href="https://purecss.io/" target="_blank">Pure CSS</a> |
Page built: 12/06/2019 20:40:44 MST</center>
Page built: 02/14/2020 15:29:10 MST</center>
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2 changes: 1 addition & 1 deletion docs/scripts/generators/index_generator.py
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<div id="buttons_container">
<a class="button-secondary pure-button" id="install_btn" href="about.html">About &raquo;</a><span id="buffer"></span>
<a class="button-secondary pure-button" id="install_btn" href="readme.html">README &raquo;</a><span id="buffer"></span>
<a class="button-secondary pure-button" id="install_btn" href="https://github.com/gwct/grampa" target="_blank">Download &raquo;</a>
<a class="button-secondary pure-button" id="install_btn" href="https://github.com/gwct/grampa/releases/latest" target="_blank">Download &raquo;</a>
</div>
</div>
</div>
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2 changes: 1 addition & 1 deletion docs/scripts/html-chunks/nav.html
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<li class="pure-menu-item"><a href="index.html" class="nav_link">Home</a></li>
<li class="pure-menu-item"><a href="about.html" class="nav_link">About</a></li>
<li class="pure-menu-item"><a href="readme.html" class="nav_link">README</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item"><a href="https://github.com/gwct/grampa/releases/latest" target="_blank" class="nav_link">Download</a></li>
<li class="pure-menu-item pure-menu-has-children pure-menu-allow-hover">
<a href="#" id="menuLink1" class="pure-menu-link">Examples</a>
<ul class="pure-menu-children">
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