Set concurrency for GitHub workflow #42
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| name: Test | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| - dev | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| env: | ||
| JAVA_VERSION: 17 | ||
| JAVA_DISTRO: zulu | ||
| jobs: | ||
| pipeline-test: | ||
| name: Pipeline tests | ||
| runs-on: ubuntu-latest | ||
| need: [module-test, workflow-test] | ||
| strategy: | ||
| fail-fast: false | ||
| max-parallel: 1 | ||
| matrix: | ||
| profile: | ||
| - gemflux | ||
| - starrsem | ||
| - starflux | ||
| - markdup | ||
| - rmdup | ||
| - ihec | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Java | ||
| uses: actions/setup-java@v4 | ||
| with: | ||
| distribution: ${{ env.JAVA_DISTRO }} | ||
| java-version: ${{ env.JAVA_VERSION }} | ||
| java-package: jre | ||
| - name: Setup Nextflow | ||
| uses: nf-core/setup-nextflow@v2 | ||
| - name: Install nf-test | ||
| uses: nf-core/setup-nf-test@v1 | ||
| - name: Run tests | ||
| run: nf-test test --tag pipeline --profile +${CI_PROFILE} | ||
| env: | ||
| CI_PROFILE: ${{ matrix.profile }} | ||
| workflow-test: | ||
| name: Workflow tests | ||
| runs-on: ubuntu-latest | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }}-workflow | ||
| cancel-in-progress: true | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Java | ||
| uses: actions/setup-java@v4 | ||
| with: | ||
| distribution: ${{ env.JAVA_DISTRO }} | ||
| java-version: ${{ env.JAVA_VERSION }} | ||
| java-package: jre | ||
| - name: Setup Nextflow | ||
| uses: nf-core/setup-nextflow@v2 | ||
| - name: Install nf-test | ||
| uses: nf-core/setup-nf-test@v1 | ||
| - name: Run tests | ||
| run: nf-test test --tag workflow | ||
| module-test: | ||
| name: Module tests | ||
| runs-on: ubuntu-latest | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }}-module | ||
| cancel-in-progress: true | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Set up Java | ||
| uses: actions/setup-java@v4 | ||
| with: | ||
| distribution: ${{ env.JAVA_DISTRO }} | ||
| java-version: ${{ env.JAVA_VERSION }} | ||
| java-package: jre | ||
| - name: Setup Nextflow | ||
| uses: nf-core/setup-nextflow@v2 | ||
| - name: Install nf-test | ||
| uses: nf-core/setup-nf-test@v1 | ||
| - name: Run tests | ||
| run: nf-test test --tag module | ||
