Merge branch 'devel' of github.com:grimbough/Rarr into devel #178
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - devel | |
| name: R-CMD-check | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.bioc-version }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: windows-2022, bioc-version: 'devel'} | |
| - { os: macOS-latest, bioc-version: 'devel'} | |
| - { os: ubuntu-22.04, bioc-version: 'devel', bioc-mirror: 'https://ftp.gwdg.de/pub/misc/bioconductor', sys-libs: 'false'} | |
| - { os: ubuntu-22.04, bioc-version: 'devel', bioc-mirror: 'https://ftp.gwdg.de/pub/misc/bioconductor', sys-libs: 'true'} | |
| steps: | |
| - name: Configure git | |
| run: | | |
| git config --global core.autocrlf false | |
| - uses: actions/checkout@v4 | |
| - name: Install system dependencies | |
| if: ${{ runner.os == 'linux' && matrix.config.sys-libs == 'true' }} | |
| run: sudo apt-get update && sudo apt-get install -y libblosc-dev libzstd-dev | |
| - name: Remove system dependencies | |
| if: ${{ runner.os == 'linux' && matrix.config.sys-libs == 'false' }} | |
| run: sudo apt-get update && sudo apt-get remove -y libblosc-dev libzstd-dev | |
| - name: Setup R and Bioconductor | |
| uses: grimbough/bioc-actions/setup-bioc@v1 | |
| with: | |
| bioc-version: ${{ matrix.config.bioc-version }} | |
| bioc-mirror: https://ftp.gwdg.de/pub/misc/bioconductor | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| - name: Bioc - Build, Install, Check | |
| id: build-install-check | |
| uses: grimbough/bioc-actions/build-install-check@v1 | |
| - name: Run BiocCheck | |
| uses: grimbough/bioc-actions/run-BiocCheck@v1 | |
| with: | |
| error-on: 'never' | |
| arguments: '--no-check-bioc-help' | |
| - name: Session info | |
| run: | | |
| sessionInfo() | |
| shell: Rscript {0} | |
| - name: Upload built package binary | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{runner.os}}-binary | |
| path: | | |
| ${{ steps.build-install-check.outputs.package-binary }} | |
| - name: Upload built package binary | |
| uses: actions/upload-artifact@v3 | |
| if: runner.os == 'Linux' | |
| with: | |
| name: BiocCheck | |
| path: | | |
| ~/**/*.BiocCheck | |