api_status.yml

name: Check external APIs

on:
  schedule:
    - cron: "0 0 * * *"
  workflow_dispatch:

jobs:
  iedb:
    name: "Check IEDB Class I and Class II APIs"

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.7']

    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install system dependencies
        run: |
          sudo apt-get -qq update
          sudo apt-get install -y ghostscript
          sudo apt-get install -y gcc
          sudo apt-get install -y pandoc
          pip install setuptools==57
          pip install pypandoc==1.7.2
      - name: Install Python dependencies
        run: |
          pip install polars==0.16.18
          pip install -e .
      - name: List installed packages
        run: |
          pip list
      - name: Run tests
        run: python -m unittest api_status_tests/test_iedb.py
  netchop:
    name: "Check NetChop API"

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.7']

    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install system dependencies
        run: |
          sudo apt-get -qq update
          sudo apt-get install -y ghostscript
          sudo apt-get install -y gcc
          sudo apt-get install -y pandoc
          pip install setuptools==57
          pip install pypandoc==1.7.2
      - name: Install Python dependencies
        run: |
          pip install polars==0.16.18
          pip install -e .
      - name: List installed packages
        run: |
          pip list
      - name: Run tests
        run: python -m unittest api_status_tests/test_netchop.py
  netmhcstabpan:
    name: "Check NetMHCstabpan API"

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.7']

    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install system dependencies
        run: |
          sudo apt-get -qq update
          sudo apt-get install -y ghostscript
          sudo apt-get install -y gcc
          sudo apt-get install -y pandoc
          pip install setuptools==57
          pip install pypandoc==1.7.2
      - name: Install Python dependencies
        run: |
          pip install polars==0.16.18
          pip install -e .
      - name: List installed packages
        run: |
          pip list
      - name: Run tests
        run: python -m unittest api_status_tests/test_netmhc_stab.py
  blast:
    name: "Check Blast API"

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.7']

    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install system dependencies
        run: |
          sudo apt-get -qq update
          sudo apt-get install -y ghostscript
          sudo apt-get install -y gcc
          sudo apt-get install -y pandoc
          pip install setuptools==57
          pip install pypandoc==1.7.2
      - name: Install Python dependencies
        run: |
          pip install polars==0.16.18
          pip install -e .
      - name: List installed packages
        run: |
          pip list
      - name: Run tests
        run: python -m unittest api_status_tests/test_blast.py