Fix ensure_synced tool

gregvonkuster · Nov 16, 2024 · 46b6657 · 46b6657
1 parent 9263f9a
commit 46b6657
Showing 1 changed file with 0 additions and 4 deletions.
diff --git a/tools/corals/ensure_synced/ensure_synced.py b/tools/corals/ensure_synced/ensure_synced.py
@@ -5,11 +5,8 @@
 
 import psycopg2
 from sqlalchemy import create_engine
-from sqlalchemy import MetaData
 from sqlalchemy.engine.url import make_url
 
-metadata = MetaData()
-
 SKIP_VALS = ['#CHROM', 'POS', 'ID', 'REF', 'ALT', 'QUAL', 'FILTER', 'INFO', 'FORMAT']
 
 
@@ -21,7 +18,6 @@ def __init__(self):
         self.outfh = open(self.args.output, "w")
         self.connect_db()
         self.engine = create_engine(self.args.database_connection_string)
-        self.metadata = MetaData(self.engine)
         self.coral_mlg_rep_sample_ids_from_db = []
         self.affy_ids_from_file = []