V1.2.1 (#247)

- fix bug where literal yaml date object doesn't get parsed correctly
- fixes addition of site.url by gh-actions workflow

New template version checklist:

- [x] I have updated CITATION and CHANGELOG as appropriate.
- [x] I have updated lab-website-template-docs as appropriate.
- [x] I have checked the testbed as appropriate.

.docker/entrypoint.sh

@@ -1,10 +1,8 @@
 #! /bin/bash
 
 # print folder contents for debugging
-echo "Contents:"
-echo ""
+printf "\n\nContents:\n\n"
 ls
-echo ""
 
 # run cite process
 python3 _cite/cite.py

.github/workflows/build-site.yaml

@@ -42,7 +42,7 @@ jobs:
 
  - name: Set root url
  run: |
- echo "\n\nurl: ${{ steps.pages.outputs.origin }}" >> _config.yaml
+ printf "\n\nurl: ${{ steps.pages.outputs.origin }}" >> _config.yaml
 
  - name: Build live version of site
  run: |

.github/workflows/first-time-setup.yaml

@@ -41,7 +41,7 @@ jobs:
  run: touch .nojekyll
 
  - name: Make placeholder homepage
- run: echo "Placeholder homepage" > index.html
+ run: printf "Placeholder homepage" > index.html
 
  - name: Commit changes to Pages branch
  uses: stefanzweifel/git-auto-commit-action@v5
@@ -70,12 +70,12 @@ jobs:
  run: |
  user="${{ github.repository_owner }}"
  description="An engaging 1-3 sentence description of your lab."
- echo "USER=${user}" >> $GITHUB_ENV
- echo "DESCRIPTION=${description}" >> $GITHUB_ENV
+ printf "USER=${user}" >> $GITHUB_ENV
+ printf "DESCRIPTION=${description}" >> $GITHUB_ENV
 
  - name: Personalize readme for user
  run: |
- echo "
+ printf "
  # ${{ env.USER }}'s Website
 
  Visit **[website url](#)** 🚀

CHANGELOG.md

@@ -2,6 +2,12 @@
 
 Reference: common-changelog.org
 
+## 1.2.1 - 2024-04-01
+
+### Changed
+
+- Minor bug fixes in cite process and sitemap generation.
+
 ## 1.2.0 - 2024-03-08
 
 ### Changed

CITATION.cff

@@ -1,8 +1,8 @@
 # citation metadata for the template itself
 
 title: "Lab Website Template"
-version: 1.2.0
-date-released: 2024-03-08
+version: 1.2.1
+date-released: 2024-04-01
 url: "https://github.com/greenelab/lab-website-template"
 authors:
  - family-names: "Rubinetti"

_cite/util.py

@@ -7,7 +7,7 @@
 import yaml
 from yaml.loader import SafeLoader
 from pathlib import Path
-from datetime import datetime
+from datetime import date, datetime
 from rich import print
 from diskcache import Cache
 
@@ -88,15 +88,17 @@ def list_of_dicts(data):
  return isinstance(data, list) and all(isinstance(entry, dict) for entry in data)
 
 
-def format_date(date):
+def format_date(_date):
  """
  format date as YYYY-MM-DD, or no date if malformed
  """
 
- if isinstance(date, int):
- return datetime.fromtimestamp(date // 1000.0).strftime("%Y-%m-%d")
+ if isinstance(_date, int):
+ return datetime.fromtimestamp(_date // 1000.0).strftime("%Y-%m-%d")
+ if isinstance(_date, (date, datetime)):
+ return _date.strftime("%Y-%m-%d")
  try:
- return datetime.strptime(date, "%Y-%m-%d").strftime("%Y-%m-%d")
+ return datetime.strptime(_date, "%Y-%m-%d").strftime("%Y-%m-%d")
  except Exception:
  return ""