Merge pull request #16 from mprobson/mprobson-contribution

[ci skip] This build is based on e8f99f3. This commit was created by the following CI build and job: https://github.com/greenelab/covid19-review/commit/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/checks https://github.com/greenelab/covid19-review/runs/61608980
greenelab · Mar 23, 2020 · 0b09c69 · 0b09c69
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diff --git a/manuscript.html b/manuscript.html
@@ -6,6 +6,7 @@
   <meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes" />
   <meta name="author" content="Halie M. Rando" />
   <meta name="author" content="Casey S. Greene" />
+  <meta name="author" content="Michael P. Robson" />
   <meta name="dcterms.date" content="2020-03-23" />
   <meta name="keywords" content="covid-19, coronavirus, pandemic, viral infection" />
   <title>SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeutics</title>
@@ -108,15 +109,18 @@
   <meta name="citation_author_institution" content="Childhood Cancer Data Lab, Alex&#39;s Lemonade Stand Foundation, Philadelphia, Pennsylvania, United States of America" />
   <meta name="citation_author_orcid" content="0000-0001-8713-9213" />
   <meta name="twitter:creator" content="@GreeneScientist" />
+  <meta name="citation_author" content="Michael P. Robson" />
+  <meta name="citation_author_institution" content="Department of Computing Sciences, Villanova University, Villanova, Pennsylvania, United States of America" />
+  <meta name="citation_author_orcid" content="0000-0002-4859-0033" />
   <link rel="canonical" href="https://greenelab.github.io/covid19-review/" />
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   <link rel="alternate" type="application/pdf" href="https://greenelab.github.io/covid19-review/manuscript.pdf" />
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+  <link rel="alternate" type="text/html" href="https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/" />
+  <meta name="manubot_html_url_versioned" content="https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/" />
+  <meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/manuscript.pdf" />
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@@ -137,9 +141,9 @@ <h1 class="title">SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://greenelab.github.io/covid19-review/v/ac89611d5ae5a1168b4763cb30cdafbb8437cfee/">permalink</a>)
+(<a href="https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/greenelab/covid19-review/tree/ac89611d5ae5a1168b4763cb30cdafbb8437cfee">greenelab/covid19-review@ac89611</a>
+from <a href="https://github.com/greenelab/covid19-review/tree/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7">greenelab/covid19-review@e8f99f3</a>
 on March 23, 2020.
 </em></small></p>
 <h2 id="authors">Authors</h2>
@@ -166,6 +170,14 @@ <h2 id="authors">Authors</h2>
 Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America; Childhood Cancer Data Lab, Alex’s Lemonade Stand Foundation, Philadelphia, Pennsylvania, United States of America
 · Funded by the Gordon and Betty Moore Foundation (GBMF 4552)
 </small></p></li>
+<li><p><strong>Michael P. Robson</strong><br>
+<img src="images/orcid.svg" class="inline_icon" alt="ORCID icon" />
+<a href="https://orcid.org/0000-0002-4859-0033">0000-0002-4859-0033</a>
+· <img src="images/github.svg" class="inline_icon" alt="GitHub icon" />
+<a href="https://github.com/mprobson">mprobson</a><br>
+<small>
+Department of Computing Sciences, Villanova University, Villanova, Pennsylvania, United States of America
+</small></p></li>
 </ul>
 <h2 class="page_break_before" id="abstract">Abstract</h2>
 <p>Since late 2019, Coronavirus disease 2019 (COVID-19) has spread around the world, resulting in the declaration of a pandemic by the World Health Organization (WHO).
@@ -233,6 +245,11 @@ <h3 id="competing-interests">Competing Interests</h3>
 <td>None</td>
 <td>2020-03-22</td>
 </tr>
+<tr class="odd">
+<td>Michael P. Robson</td>
+<td>None</td>
+<td>2020-03-23</td>
+</tr>
 </tbody>
 </table>
 <h3 id="author-contributions">Author Contributions</h3>
@@ -256,6 +273,10 @@ <h3 id="author-contributions">Author Contributions</h3>
 <td>Casey S. Greene</td>
 <td>Conceptualization</td>
 </tr>
+<tr class="odd">
+<td>Michael P. Robson</td>
+<td>Software</td>
+</tr>
 </tbody>
 </table>
 <h1 class="page_break_before" id="formatting-examples">Formatting Examples</h1>
@@ -466,7 +487,7 @@ <h2 id="tables">Tables</h2>
 </tbody>
 </table>
 </div>
-<div id="tbl:d8d1a9f8-2e08-4e39-94e3-b47bf3a1dcab" class="tablenos">
+<div id="tbl:78b3f708-3384-4380-9610-4af85429d9d5" class="tablenos">
 <table>
 <caption><span>Table 3:</span> A table with merged cells using the <code>attributes</code> plugin.
 </caption>

diff --git a/manuscript.md b/manuscript.md
@@ -2,6 +2,7 @@
 author-meta:
 - Halie M. Rando
 - Casey S. Greene
+- Michael P. Robson
 bibliography:
 - content/manual-references.json
 date-meta: '2020-03-23'
@@ -57,6 +58,12 @@ header-includes: '<!--
 
   <meta name="twitter:creator" content="@GreeneScientist" />
 
+  <meta name="citation_author" content="Michael P. Robson" />
+
+  <meta name="citation_author_institution" content="Department of Computing Sciences, Villanova University, Villanova, Pennsylvania, United States of America" />
+
+  <meta name="citation_author_orcid" content="0000-0002-4859-0033" />
+
   <link rel="canonical" href="https://greenelab.github.io/covid19-review/" />
 
   <meta property="og:url" content="https://greenelab.github.io/covid19-review/" />
@@ -69,11 +76,11 @@ header-includes: '<!--
 
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-  <link rel="alternate" type="text/html" href="https://greenelab.github.io/covid19-review/v/ac89611d5ae5a1168b4763cb30cdafbb8437cfee/" />
+  <link rel="alternate" type="text/html" href="https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/" />
 
-  <meta name="manubot_html_url_versioned" content="https://greenelab.github.io/covid19-review/v/ac89611d5ae5a1168b4763cb30cdafbb8437cfee/" />
+  <meta name="manubot_html_url_versioned" content="https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/" />
 
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+  <meta name="manubot_pdf_url_versioned" content="https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/manuscript.pdf" />
 
   <meta property="og:type" content="article" />
 
@@ -106,9 +113,9 @@ title: 'SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeut
 
 <small><em>
 This manuscript
-([permalink](https://greenelab.github.io/covid19-review/v/ac89611d5ae5a1168b4763cb30cdafbb8437cfee/))
+([permalink](https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/))
 was automatically generated
-from [greenelab/covid19-review@ac89611](https://github.com/greenelab/covid19-review/tree/ac89611d5ae5a1168b4763cb30cdafbb8437cfee)
+from [greenelab/covid19-review@e8f99f3](https://github.com/greenelab/covid19-review/tree/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7)
 on March 23, 2020.
 </em></small>
 
@@ -140,6 +147,15 @@ on March 23, 2020.
      · Funded by the Gordon and Betty Moore Foundation (GBMF 4552)
   </small>
 
++ **Michael P. Robson**<br>
+    ![ORCID icon](images/orcid.svg){.inline_icon}
+    [0000-0002-4859-0033](https://orcid.org/0000-0002-4859-0033)
+    · ![GitHub icon](images/github.svg){.inline_icon}
+    [mprobson](https://github.com/mprobson)<br>
+  <small>
+     Department of Computing Sciences, Villanova University, Villanova, Pennsylvania, United States of America
+  </small>
+
 
 
 ## Abstract {.page_break_before} 
@@ -219,13 +235,15 @@ This section will include a review of information available about therapeutics.
 |---|---|---|
 |Halie M. Rando|None|2020-03-22|
 |Casey S. Greene|None|2020-03-22|
+|Michael P. Robson|None|2020-03-23|
 
 ### Author Contributions
 
 |Author|Contributions|
 |---|---|
 |Halie M. Rando|Project Administration, Writing - Original Draft, Methodology|
 |Casey S. Greene|Conceptualization|
+|Michael P. Robson|Software|
 
 
 # Formatting Examples   {.page_break_before} 

diff --git a/manuscript.pdf b/manuscript.pdf
diff --git a/variables.json b/variables.json
@@ -11,9 +11,10 @@
     "date-meta": "2020-03-23",
     "author-meta": [
       "Halie M. Rando",
-      "Casey S. Greene"
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+      "Michael P. Robson"
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+    "header-includes": "<!--\nManubot generated metadata rendered from header-includes-template.html.\nSuggest improvements at https://github.com/manubot/manubot/blob/master/manubot/process/header-includes-template.html\n-->\n<meta name=\"dc.format\" content=\"text/html\" />\n<meta name=\"dc.title\" content=\"SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeutics\" />\n<meta name=\"citation_title\" content=\"SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeutics\" />\n<meta property=\"og:title\" content=\"SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeutics\" />\n<meta property=\"twitter:title\" content=\"SARS-CoV-2 and COVID-19: An Evolving Review of Diagnostics and Therapeutics\" />\n<meta name=\"dc.date\" content=\"2020-03-23\" />\n<meta name=\"citation_publication_date\" content=\"2020-03-23\" />\n<meta name=\"dc.language\" content=\"en-US\" />\n<meta name=\"citation_language\" content=\"en-US\" />\n<meta name=\"dc.relation.ispartof\" content=\"Manubot\" />\n<meta name=\"dc.publisher\" content=\"Manubot\" />\n<meta name=\"citation_journal_title\" content=\"Manubot\" />\n<meta name=\"citation_technical_report_institution\" content=\"Manubot\" />\n<meta name=\"citation_author\" content=\"Halie M. Rando\" />\n<meta name=\"citation_author_institution\" content=\"Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0001-7688-1770\" />\n<meta name=\"twitter:creator\" content=\"@tamefoxtime\" />\n<meta name=\"citation_author\" content=\"Casey S. Greene\" />\n<meta name=\"citation_author_institution\" content=\"Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America\" />\n<meta name=\"citation_author_institution\" content=\"Childhood Cancer Data Lab, Alex&#39;s Lemonade Stand Foundation, Philadelphia, Pennsylvania, United States of America\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0001-8713-9213\" />\n<meta name=\"twitter:creator\" content=\"@GreeneScientist\" />\n<meta name=\"citation_author\" content=\"Michael P. Robson\" />\n<meta name=\"citation_author_institution\" content=\"Department of Computing Sciences, Villanova University, Villanova, Pennsylvania, United States of America\" />\n<meta name=\"citation_author_orcid\" content=\"0000-0002-4859-0033\" />\n<link rel=\"canonical\" href=\"https://greenelab.github.io/covid19-review/\" />\n<meta property=\"og:url\" content=\"https://greenelab.github.io/covid19-review/\" />\n<meta property=\"twitter:url\" content=\"https://greenelab.github.io/covid19-review/\" />\n<meta name=\"citation_fulltext_html_url\" content=\"https://greenelab.github.io/covid19-review/\" />\n<meta name=\"citation_pdf_url\" content=\"https://greenelab.github.io/covid19-review/manuscript.pdf\" />\n<link rel=\"alternate\" type=\"application/pdf\" href=\"https://greenelab.github.io/covid19-review/manuscript.pdf\" />\n<link rel=\"alternate\" type=\"text/html\" href=\"https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/\" />\n<meta name=\"manubot_html_url_versioned\" content=\"https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/\" />\n<meta name=\"manubot_pdf_url_versioned\" content=\"https://greenelab.github.io/covid19-review/v/e8f99f3d56ac8fcc8b5044b31f996c7af66853b7/manuscript.pdf\" />\n<meta property=\"og:type\" content=\"article\" />\n<meta property=\"twitter:card\" content=\"summary_large_image\" />\n<link rel=\"icon\" type=\"image/png\" sizes=\"192x192\" href=\"https://manubot.org/favicon-192x192.png\" />\n<link rel=\"mask-icon\" href=\"https://manubot.org/safari-pinned-tab.svg\" color=\"#ad1457\" />\n<meta name=\"theme-color\" content=\"#ad1457\" />\n<!-- end Manubot generated metadata -->",
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@@ -72,6 +73,26 @@
           1,
           2
         ]
+      },
+      {
+        "github": "mprobson",
+        "name": "Michael P. Robson",
+        "initials": "MPR",
+        "orcid": "0000-0002-4859-0033",
+        "email": "[email protected]",
+        "contributions": [
+          "Software"
+        ],
+        "affiliations": [
+          "Department of Computing Sciences, Villanova University, Villanova, Pennsylvania, United States of America"
+        ],
+        "coi": {
+          "string": "None",
+          "lastapproved": "2020-03-23"
+        },
+        "affiliation_numbers": [
+          3
+        ]
       }
     ],
     "affiliations": [
@@ -82,22 +103,26 @@
       {
         "affiliation": "Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Philadelphia, Pennsylvania, United States of America",
         "affiliation_number": 2
+      },
+      {
+        "affiliation": "Department of Computing Sciences, Villanova University, Villanova, Pennsylvania, United States of America",
+        "affiliation_number": 3
       }
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