Merge pull request #37 from JaimeCernuda/master

appending the jarvis envioprnment to the pbs command to execute

jarvis_util/shell/pbs_exec.py

@@ -6,7 +6,7 @@
 """
 
 from jarvis_util.jutil_manager import JutilManager
-from jarvis_util.shell.local_exec import LocalExec
+from jarvis_util.shell.local_exec import LocalExec, LocalExecInfo
 from .exec_info import ExecInfo, ExecType
 
 
@@ -31,6 +31,13 @@ def __init__(self, cmd, exec_info):
  self.account = exec_info.account
  self.queue = exec_info.queue
  self.env_vars = exec_info.env_vars
+
+ jarvis_comma_list = ','.join(exec_info.basic_env.keys())
+ if self.env_vars:
+ self.env_vars = f'{self.env_vars},{jarvis_comma_list}'
+ else:
+ self.env_vars = jarvis_comma_list
+
  super().__init__(self.pbscmd(),
  exec_info.mod(env=exec_info.basic_env))