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Changes for openmpi #3

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Changes for openmpi

Changes for openmpi #3

Workflow file for this run

.github/workflows/ci_build_scm_ubuntu_22.04.yml at de62a3d
name: CI test to build the CCPP-SCM on ubuntu v22.04
on: [pull_request,workflow_dispatch]
jobs:
build_scm:
# The type of runner that the job will run on
runs-on: ubuntu-22.04
strategy:
matrix:
fortran-compiler: [gfortran-10, gfortran-11, gfortran-12]
build-type: [Release, Debug]
py-version: [3.7.13, 3.9.12]
# Environmental variables
env:
NFHOME: /home/runner/netcdf-fortran
NFVERSION: v4.5.3
bacio_ROOT: /home/runner/bacio
sp_ROOT: /home/runner/NCEPLIBS-sp
w3emc_ROOT: /home/runner/myw3emc
SCM_ROOT: /home/runner/work/ccpp-scm/ccpp-scm
suites: SCM_GFS_v15p2,SCM_GFS_v16,SCM_GFS_v17_p8,SCM_HRRR,SCM_RRFS_v1beta,SCM_RAP,SCM_WoFS_v0,SCM_GFS_v15p2_ps,SCM_GFS_v16_ps,SCM_GFS_v17_p8_ps,SCM_HRRR_ps,SCM_RRFS_v1beta_ps,SCM_RAP_ps,SCM_WoFS_v0_ps
CC: mpicc
FC: mpif90
# Workflow steps
steps:
#######################################################################################
# Initial
#######################################################################################
- name: Checkout SCM code (into /home/runner/work/ccpp-scm/)
uses: actions/checkout@v3
- name: Initialize submodules
run: git submodule update --init --recursive
#######################################################################################
# Python setup
#######################################################################################
- name: Set up Python
uses: actions/setup-python@v3
with:
python-version: ${{matrix.py-version}}
- name: Add conda to system path
run: |
echo $CONDA/bin >> $GITHUB_PATH
- name: Install NetCDF Python libraries
run: |
conda install --yes -c conda-forge h5py>=3.4 netCDF4 f90nml
- name: Update system packages
run: sudo apt-get update
#######################################################################################
# Install FORTRAN dependencies
#######################################################################################
- name: Install openmpi
run: |

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You have an error in your yaml syntax on line 62
wget https://github.com/open-mpi/ompi/archive/refs/tags/v4.1.6.tar.gz
tar -xvf v4.1.6.tar.gz
cd ompi-4.1.6
./autogen.pl
./configure --prefix=/home/runner/ompi-4.1.6
make -j4
make install
echo "LD_LIBRARY_PATH=/home/runner/ompi-4.1.6/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
echo "PATH=/home/runner/ompi-4.1.6/bin:$PATH" >> $GITHUB_ENV
- name: Cache bacio library v2.4.1
id: cache-bacio-fortran
uses: actions/cache@v3
with:
path: /home/runner/bacio
key: cache-bacio-fortran-${{matrix.fortran-compiler}}-key
- name: Install bacio library v2.4.1
if: steps.cache-bacio-fortran.outputs.cache-hit != 'true'
run: |
git clone --branch v2.4.1 https://github.com/NOAA-EMC/NCEPLIBS-bacio.git bacio
cd bacio && mkdir build && cd build
cmake -DCMAKE_INSTALL_PREFIX=${bacio_ROOT} ../
make -j2
make install
echo "bacio_DIR=/home/runner/bacio/lib/cmake/bacio" >> $GITHUB_ENV
- name: Cache SP-library v2.3.3
id: cache-sp-fortran
uses: actions/cache@v3
with:
path: /home/runner/NCEPLIBS-sp
key: cache-sp-fortran-${{matrix.fortran-compiler}}-key
- name: Install SP-library v2.3.3
if: steps.cache-sp-fortran.outputs.cache-hit != 'true'
run: |
git clone --branch v2.3.3 https://github.com/NOAA-EMC/NCEPLIBS-sp.git NCEPLIBS-sp
cd NCEPLIBS-sp && mkdir build && cd build
cmake -DCMAKE_INSTALL_PREFIX=${sp_ROOT} ../
make -j2
make install
echo "sp_DIR=/home/runner/NCEPLIBS-sp/lib/cmake/sp" >> $GITHUB_ENV
- name: Cache w3emc library v2.9.2
id: cache-w3emc-fortran
uses: actions/cache@v3
with:
path: /home/runner/myw3emc
key: cache-w3emc-fortran-${{matrix.fortran-compiler}}-key
- name: Install w3emc library v2.9.2
if: steps.cache-w3emc-fortran.outputs.cache-hit != 'true'
run: |
git clone --branch v2.9.2 https://github.com/NOAA-EMC/NCEPLIBS-w3emc.git NCEPLIBS-w3emc
cd NCEPLIBS-w3emc && mkdir build && cd build
cmake -DCMAKE_INSTALL_PREFIX=${w3emc_ROOT} ../
make -j2
make install
echo "w3emc_DIR=/home/runner/myw3emc/lib/cmake/w3emc" >> $GITHUB_ENV
- name: Install NetCDF C library
run: |
sudo apt-get update
sudo apt-get install libnetcdf-dev
- name: Cache NetCDF Fortran library
id: cache-netcdf-fortran
uses: actions/cache@v3
with:
path: /home/runner/netcdf-fortran
key: cache-netcdf-fortran-${{matrix.fortran-compiler}}-key
- name: Install NetCDF Fortran library
if: steps.cache-netcdf-fortran.outputs.cache-hit != 'true'
run: |
git clone --branch ${NFVERSION} https://github.com/Unidata/netcdf-fortran.git
cd netcdf-fortran
./configure
make -j
sudo make install
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${NFHOME}/lib
#######################################################################################
# Build SCM.
#######################################################################################
- name: Configure build with CMake (Release)
if: contains(matrix.build-type, 'Release')
run: |
cd ${SCM_ROOT}/scm
mkdir bin && cd bin
cmake -DCCPP_SUITES=${suites} ../src
- name: Configure build with CMake (Debug)
if: contains(matrix.build-type, 'Debug')
run: |
cd ${SCM_ROOT}/scm
mkdir bin && cd bin
cmake -DCCPP_SUITES=${suites} -DCMAKE_BUILD_TYPE=Debug ../src
- name: Build SCM
run: |
cd ${SCM_ROOT}/scm/bin
make -j4