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Refactor ShardedBAMWriting for easier reuse #141

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iliat opened this issue Sep 7, 2015 · 0 comments
Open

Refactor ShardedBAMWriting for easier reuse #141

iliat opened this issue Sep 7, 2015 · 0 comments
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@iliat
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iliat commented Sep 7, 2015

Once #140 is in, refactor the ShardedBAMWriting.java into several classes for easier reuse in other pipelines.
Should be pretty easy since the code is already separated into inner classes.
Also, port isUnmapped(Read) into utils-java.
Also, add exponential backoff to GCS calls.

@iliat iliat self-assigned this Sep 7, 2015
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