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Issues: googlegenomics/dataflow-java

20 Open 49 Closed
20 Open 49 Closed
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Issues list

Security Policy violation Binary Artifacts allstar
#225 opened Dec 15, 2022 by google-allstar-prod bot
28
Deprecate this repo?
#224 opened Jun 1, 2020 by tswast
Getting started instructions link in README 404s
#223 opened Jun 1, 2020 by tswast
Store data in info field of Reads proto into BigQuery table.
#222 opened Nov 8, 2018 by nmousavi
@nmousavi
Validate the given BigQuery table in LoadReadsToBigQuery pipeline.
#221 opened Nov 8, 2018 by nmousavi
@nmousavi
Update to a newer version of htsjdk dependency.
#216 opened Sep 21, 2017 by deflaux
Update ShardedBAMWriting to be compatible with parallel BAM reading.
#214 opened Sep 15, 2017 by deflaux
Identity By State variant streamer fails with write error
#213 opened May 26, 2017 by pbilling
1
Push AnnotationUtils down into utils-java
#202 opened Jun 15, 2016 by deflaux
@deflaux
add support for STRICT intra-shard boundary
#201 opened Jun 14, 2016 by deflaux
@deflaux
Add integration test for DeleteVariants pipeline.
#190 opened May 5, 2016 by deflaux
Consider dividing integration tests into two groups.
#181 opened Apr 15, 2016 by deflaux
Add exponential backoff to deletion in CombineShards and also to SeekableGCSStream.
#173 opened Mar 2, 2016 by iliat
@iliat
Add BAMDiff to integration test for sharded writing
#172 opened Mar 2, 2016 by iliat
@iliat
Push HeaderInfo down into utils-java
#168 opened Feb 15, 2016 by iliat
@iliat
Confirm that referenceSets for variants and reads match in VerifyBamId. enhancement
#156 opened Dec 3, 2015 by deflaux
@nitag
Refactor ShardedBAMWriting for easier reuse
#141 opened Sep 7, 2015 by iliat
@iliat
Move makeSAMRecord (from googlegenomics/gatk-tools-java) to ReadConverter
#102 opened Jun 24, 2015 by davidadamsphd
5
Speed up git clone enhancement help wanted
#101 opened Jun 24, 2015 by deflaux
Update code to use Dataflow's new support for custom sources
#61 opened May 4, 2015 by deflaux
1
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