Do not test ref_pos which depends on a specific RDKit version #1
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name: Continuous Integration | |
on: | |
# Trigger the workflow on push or pull request, only on the main branch. | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
workflow_dispatch: | |
jobs: | |
build: | |
name: "build ${{ matrix.name-prefix }} (py ${{ matrix.python-version }} on ${{ matrix.os }})" | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
include: | |
- name-prefix: "all tests" | |
python-version: '3.11' | |
os: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
sudo apt-get install -y hmmer | |
pip install --upgrade pip | |
pip install -r dev-requirements.txt | |
pip install --no-deps . | |
build_data | |
- name: Run CPU-only tests | |
run: | | |
python run_alphafold_data_test.py |