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Add code to split blocks and update edges #10

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Aug 2, 2024
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Add code to split blocks and update edges #10

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2 changes: 1 addition & 1 deletion migrations/01-initial/up.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ CREATE TABLE block (
strand TEXT NOT NULL DEFAULT "1",
FOREIGN KEY(sequence_hash) REFERENCES sequence(hash),
FOREIGN KEY(block_group_id) REFERENCES block_group(id),
constraint chk_strand check (strand in ('-1', '1', '0', '.', '?'))
constraint chk_strand check (strand in ('-1', '1', '0', '.', '?', '+', '-'))
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on the db side, we probably should not use +/- if we have 1/-1

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let's actually drop the -1/1/0 for the gff standards

);
CREATE UNIQUE INDEX block_uidx ON block(sequence_hash, block_group_id, start, end, strand);

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