Fix gfa test

ginkgobioworks · Oct 22, 2024 · 38c0659 · 38c0659
1 parent 34b1b66
commit 38c0659
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/fixtures/simple.gfa b/fixtures/simple.gfa
@@ -1,8 +1,8 @@
 H	VN:Z:1.2
-S	1	ATC	SN:Z:123	SO:i:0	SR:i:0
-S	2	GATCGATCGA	SN:Z:123	SO:i:1	SR:i:0
-S	3	TCGATCGGG	SN:Z:123	SO:i:2	SR:i:0
-S	4	AACACACAGAGA	SN:Z:123	SO:i:6	SR:i:0
+S	1	ATC	SN:Z:m123	SO:i:0	SR:i:0
+S	2	GATCGATCGA	SN:Z:m123	SO:i:3	SR:i:0
+S	3	TCGATCGGG	SN:Z:m123	SO:i:13	SR:i:0
+S	4	AACACACAGAGA	SN:Z:m123	SO:i:22	SR:i:0
 L	1	+	2	+	*
 L	2	+	3	+	*
 L	3	+	4	+	*

diff --git a/src/imports/gfa.rs b/src/imports/gfa.rs
@@ -238,13 +238,13 @@ mod tests {
             "select * from path where block_group_id = ?1 AND name = ?2",
             vec![
                 SQLValue::from(block_group_id),
-                SQLValue::from("124".to_string()),
+                SQLValue::from("m123".to_string()),
             ],
         )[0]
         .clone();
 
         let result = Path::sequence(conn, path);
-        assert_eq!(result, "ATGGCATATTCGCAGCT");
+        assert_eq!(result, "ATCGATCGATCGATCGATCGGGAACACACAGAGA");
 
         let node_count = Node::query(conn, "select * from nodes", vec![]).len() as i64;
         assert_eq!(node_count, 6);