Remove origin, setup simple test

ginkgobioworks · Aug 1, 2024 · 05644a3 · 05644a3
1 parent a1eefa8
commit 05644a3
Show file tree

Hide file tree

Showing 3 changed files with 153 additions and 95 deletions.
diff --git a/migrations/01-initial/up.sql b/migrations/01-initial/up.sql
@@ -38,15 +38,13 @@ CREATE UNIQUE INDEX block_uidx ON block(sequence_hash, block_group_id, start, en
 
 CREATE TABLE edges (
   id INTEGER PRIMARY KEY NOT NULL,
-  source_id INTEGER NOT NULL,
+  source_id INTEGER,
   target_id INTEGER,
-  origin INTEGER NOT NULL,
   chromosome_index INTEGER NOT NULL,
   phased INTEGER NOT NULL,
   FOREIGN KEY(source_id) REFERENCES block(id),
   FOREIGN KEY(target_id) REFERENCES block(id),
   constraint chk_phased check (phased in (0, 1))
-  constraint chk_origin check (origin in (0, 1))
 );
 CREATE UNIQUE INDEX edge_uidx ON edges(source_id, target_id, chromosome_index, phased);
 

diff --git a/src/main.rs b/src/main.rs
@@ -80,7 +80,7 @@ fn import_fasta(fasta: &String, name: &String, shallow: bool, conn: &mut Connect
                 (sequence.len() as i32),
                 &"1".to_string(),
             );
-            let edge = models::Edge::create(conn, block.id, None, 1, 0, 0);
+            let edge = models::Edge::create(conn, Some(block.id), None, 0, 0);
         }
         println!("Created it");
     } else {