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@@ -264,29 +264,42 @@ process.shell = ['/bin/bash', '-euo', 'pipefail'] | |
def trace_timestamp = new java.util.Date().format( 'yyyy-MM-dd_HH-mm-ss') | ||
timeline { | ||
enabled = true | ||
file = "${params.tracedir}/execution_timeline_${trace_timestamp}.html" | ||
file = "${params.tracedir}/pipeline_info/execution_timeline_${trace_timestamp}.html" | ||
} | ||
report { | ||
enabled = true | ||
file = "${params.tracedir}/execution_report_${trace_timestamp}.html" | ||
file = "${params.tracedir}/pipeline_info/execution_report_${trace_timestamp}.html" | ||
} | ||
trace { | ||
enabled = true | ||
file = "${params.tracedir}/execution_trace_${trace_timestamp}.txt" | ||
file = "${params.tracedir}/pipeline_info/execution_trace_${trace_timestamp}.txt" | ||
} | ||
dag { | ||
enabled = true | ||
file = "${params.tracedir}/pipeline_dag_${trace_timestamp}.html" | ||
file = "${params.tracedir}/pipeline_info/pipeline_dag_${trace_timestamp}.html" | ||
} | ||
prov | ||
{ | ||
enabled = true | ||
formats { | ||
bco { | ||
file = "${params.outdir}/pipeline_info/manifest_${trace_timestamp}.bco.json" | ||
} | ||
} | ||
} | ||
|
||
manifest { | ||
name = 'nf-snvcalling' | ||
author = 'Kuebra Narci [email protected]' | ||
homePage = 'https://github.com/kubranarci/nf-snvcalling' | ||
description = 'ODCF SNV Calling pipeline' | ||
mainScript = 'main.nf' | ||
nextflowVersion = '!>=21.10.3' | ||
version = '1.0dev' | ||
nextflowVersion = '!>=23.10.3' | ||
version = '2.0.1' | ||
} | ||
// Nextflow plugins | ||
plugins { | ||
id '[email protected]' // Provenance reports for pipeline runs | ||
} | ||
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||
// Load modules.config for DSL2 module specific options | ||
|