prettier

ghga-de · Jan 15, 2024 · 2fc088c · 2fc088c
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Showing 6 changed files with 4 additions and 24 deletions.
diff --git a/README.md b/README.md
@@ -138,7 +138,7 @@ Note that some form of configuration will be needed so that Nextflow knows how t
 
 **control**: The path to the control file, if there is no control will be kept blank.
 
-**control_index***: The path to the control index file, if there is no control will be kept blank.
+**control_index\***: The path to the control index file, if there is no control will be kept blank.
 
 ## Data Requirements
 

diff --git a/assets/samplesheet_val_WES.csv b/assets/samplesheet_val_WES.csv
diff --git a/assets/samplesheet_val_WGS.csv b/assets/samplesheet_val_WGS.csv
diff --git a/conf/test.config b/conf/test.config
@@ -16,9 +16,9 @@ params {
     config_profile_description = 'Use test dataset and test profile for pytest on github actions'
 
     // Limit resources so that this can run on GitHub Actions
-    max_cpus   = 30
-    max_memory = '250.GB'
-    max_time   = '48.h'
+    max_cpus   = 12
+    max_memory = '50.GB'
+    max_time   = '2.h'
 
     // Input data
     input       = "${projectDir}/seq2_testdata_snv/samplesheet_test.csv"

diff --git a/run_snvcall.sh b/run_snvcall.sh
diff --git a/run_snvcall_hg38.sh b/run_snvcall_hg38.sh