pass formatting checks

spotfishing/__init__.py

@@ -1,6 +1,10 @@
 """Package-level members"""
 
-from ._constants import ROI_AREA_KEY, ROI_MEAN_INTENSITY_KEY, ROI_MEAN_INTENSITY_KEY_CAMEL_CASE
+from ._constants import (
+    ROI_AREA_KEY,
+    ROI_MEAN_INTENSITY_KEY,
+    ROI_MEAN_INTENSITY_KEY_CAMEL_CASE,
+)
 from ._exceptions import *
 from .detection_result import DetectionResult, RoiCenterKeys
 from .detectors import detect_spots_dog, detect_spots_int
@@ -11,7 +15,7 @@
 
 __all__ = [
     "ROI_AREA_KEY",
-    "ROI_MEAN_INTENSITY_KEY_CAMEL_CASE", # Only export this (not the snake case one).
+    "ROI_MEAN_INTENSITY_KEY_CAMEL_CASE",  # Only export this (not the snake case one).
     "DifferenceOfGaussiansTransformation",
     "DimensionalityError",
     "RoiCenterKeys",

spotfishing/_constants.py

@@ -6,7 +6,7 @@
 __all__ = [
     "ROI_AREA_KEY",
     "ROI_CENTROID_KEY",
-    "ROI_MEAN_INTENSITY_KEY", # Export this for package-internal use.
+    "ROI_MEAN_INTENSITY_KEY",  # Export this for package-internal use.
     "ROI_MEAN_INTENSITY_KEY_CAMEL_CASE",
 ]
 

spotfishing/detection_result.py

@@ -30,15 +30,17 @@ def to_list(cls) -> list[str]:
 
 # how to rename columns arising from extraction from skimage.measure.regionprops_table, to better suit downstream analysis
 # TODO: consider making this configurable, see: https://github.com/gerlichlab/spotfishing/issues/1
-SPOT_DETECTION_COLUMN_RENAMING: tuple[str, str] = tuple(
+SPOT_DETECTION_COLUMN_RENAMING: tuple[tuple[str, str], ...] = tuple(
     (f"{ROI_CENTROID_KEY}-{i}", c) for i, c in enumerate(RoiCenterKeys.to_list())
 ) + (
     (ROI_AREA_KEY, ROI_AREA_KEY),
-    (ROI_MEAN_INTENSITY_KEY, ROI_MEAN_INTENSITY_KEY_CAMEL_CASE), 
+    (ROI_MEAN_INTENSITY_KEY, ROI_MEAN_INTENSITY_KEY_CAMEL_CASE),
 )
 
 # the sequence of columns of fields extracted from skimage.measure.regionprops_table, after accounting for expansion in multiple dimensions (e.g., centroid_weighted)
-SKIMAGE_REGIONPROPS_TABLE_COLUMNS_EXPANDED = [old for old, _ in SPOT_DETECTION_COLUMN_RENAMING]
+SKIMAGE_REGIONPROPS_TABLE_COLUMNS_EXPANDED = [
+    old for old, _ in SPOT_DETECTION_COLUMN_RENAMING
+]
 
 # the expected column names in a detection result table, after extraction and renaming
 DETECTION_RESULT_TABLE_COLUMNS = [new for _, new in SPOT_DETECTION_COLUMN_RENAMING]

spotfishing/detectors.py

@@ -17,8 +17,8 @@
 from ._exceptions import DimensionalityError
 from ._types import *
 from .detection_result import (
-    SPOT_DETECTION_COLUMN_RENAMING,
     SKIMAGE_REGIONPROPS_TABLE_COLUMNS_EXPANDED,
+    SPOT_DETECTION_COLUMN_RENAMING,
     DetectionResult,
 )
 from .dog_transform import DifferenceOfGaussiansTransformation