Code

Pixel file format#6

Code

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Mittmich merged 40 commits intomastergerlichlab/spoc:masterfrom pixel-file-formatgerlichlab/spoc:pixel-file-formatCopy head branch name to clipboardNov 11, 2023

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Commits

Commits on Aug 26, 2023

• untested implementation of global parameter writing for contacts

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• implemented writing file information into global metadata (some tests still missing)

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Commits on Sep 3, 2023

• Merge branch 'dask-support-fragment-handling' into metadata-handling

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• removed unused methods

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• added missing tests

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• added description of contact persistence

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Commits on Sep 9, 2023

• implement metadata reading of filemanager

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• implemented loading of pixels

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• untested wirte pixels implementation

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• added tests for writting pixels

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• convenience method to load pixels from uri (untested)

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Commits on Sep 18, 2023

• added tests for uri based pixel loading

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• updated pixels description

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Commits on Sep 24, 2023

• added mkdocs config file and some markdown pages

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Commits on Oct 3, 2023

• added more files to documentation

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Commits on Oct 7, 2023

• updated github pages

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• blackify

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• pylint

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• linting input

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• added missing test files

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• added additional files to docs

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• added plugin installation to gh pages

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• added google style docstrings

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• added python workflow

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• added event trigger

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• blackify

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• added pytest dependency

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• added newer version of pytest

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• changed trigger for python workflow

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• Cleaned up readme.md

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Commits on Oct 29, 2023

• unified file format for contacts and pixels

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Commits on Oct 30, 2023

• Merge branch 'master' into pixel-file-format

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• better examples

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• Merge branch 'docs' into pixel-file-format

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Commits on Oct 31, 2023

• Fix minor issues during review

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Commits on Nov 2, 2023

• Change test folders and other minor review changes

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• Minor changes to source code folder structure

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• Split contacts and fragments tests

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• Update doc strings

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Commits on Nov 11, 2023

• incorporated PR feedback

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