v0.2.3 release prep

CHANGELOG.md

@@ -4,6 +4,11 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [v0.2.3] - 2024-11-27
+
+### Changed
+* Change example and test to match what will now come from `looptrace` v0.11
+
 ## [v0.2.2] - 2024-11-21
 
 ### Changed

looptrace_loci_vis/__init__.py

@@ -1,3 +1,3 @@
 """Napari plugin for visualising locus-specific points from looptrace"""
 
-__version__ = "0.2.2"
+__version__ = "0.2.3"

looptrace_loci_vis/examples/P0001.qcfail.csv

@@ -1,10 +1,10 @@
 0,13,5.880338307654485,12.20211975317036,10.728294496728491,S
-0,17,10.594366532607864,10.95875680073854,20.711938561802768,R;S;xy;z
+0,17,10.594366532607864,10.95875680073854,20.711938561802768,R S xy z
 0,47,10.198132167665957,14.398450914314138,15.378219719077295,R
-0,48,0.7173811741523715,13.999908344240598,2.011625563698183,R;z
+0,48,0.7173811741523715,13.999908344240598,2.011625563698183,R z
 0,49,6.274792365451074,14.440034853392085,8.81613597404698,S
-0,69,10.03907938905064,18.453449673327853,7.594187495036839,R;S;xy;z
+0,69,10.03907938905064,18.453449673327853,7.594187495036839,R S xy z
 0,71,8.157075382512406,12.780500232574296,3.1916456736466685,R
 0,74,7.03360935199292,15.324188332927145,3.6995859572616823,xy
-0,76,2.426576702500344,20.546530442060508,2.151493771689803,R;S;xy;O
+0,76,2.426576702500344,20.546530442060508,2.151493771689803,R S xy O
 0,77,6.0415531254567885,13.910733825016758,10.238202728231837,S

pyproject.toml

@@ -53,12 +53,12 @@ looptrace-loci-vis = "looptrace_loci_vis:napari.yaml"
 [project.optional-dependencies]
 formatting = [
     "codespell >= 2.2.4",
-    "ruff >= 0.4.6",
+    "ruff >= 0.8.0",
 ]
 linting = [
     "mypy >= 1.0.1",
     "pandas-stubs",
-    "ruff >= 0.3",
+    "ruff >= 0.8.0",
 ]
 testsuite = [
     "npe2",
@@ -128,8 +128,8 @@ ignore = [
     # Imports and type annotations
     "ANN003",  # Missing type annotation for kwargs
     "FA100",  # Missing `from __future__ import annotations`, but uses `typing.*`
-    "TCH002",  # Move third-party import `...` into a type-checking block
-    "TCH003",  # Move standard library import `...` into a type-checking block
+    "TC002",  # Move third-party import `...` into a type-checking block
+    "TC003",  # Move standard library import `...` into a type-checking block
     "UP007",  # Use `X | Y` for type annotations
 
     # Ruff recommends avoiding these checks when using `ruff format`. Since
@@ -164,7 +164,6 @@ ignore = [
     # Ignore some groups of checks in our test code.
     "ANN",  # Type annotations
     "D10",  # Missing docstrings
-    "TCH00",  # Imports and type checking blocks
     "INP001", # File `...` is part of an implicit namespace package. Add an `__init__.py`.
 
     # Ignore some more specific checks in our test code.

tests/test_locus_points_smoke.py

@@ -6,14 +6,14 @@
 from looptrace_loci_vis.reader import records_to_qcfail_layer_data
 
 FAIL_LINES_SAMPLE = """0,13,5.880338307654485,12.20211975317036,10.728294496728491,S
-0,17,10.594366532607864,10.95875680073854,20.711938561802768,R;S;xy;z
+0,17,10.594366532607864,10.95875680073854,20.711938561802768,R S xy z
 0,47,10.198132167665957,14.398450914314138,15.378219719077295,R
-0,48,0.7173811741523715,13.999908344240598,2.011625563698183,R;z
+0,48,0.7173811741523715,13.999908344240598,2.011625563698183,R z
 0,49,6.274792365451074,14.440034853392085,8.81613597404698,S
-0,69,10.03907938905064,18.453449673327853,7.594187495036839,R;S;xy;z
+0,69,10.03907938905064,18.453449673327853,7.594187495036839,R S xy z
 0,71,8.157075382512406,12.780500232574296,3.1916456736466685,R
 0,74,7.03360935199292,15.324188332927145,3.6995859572616823,xy
-0,76,2.426576702500344,20.546530442060508,2.151493771689803,R;S;xy;O
+0,76,2.426576702500344,20.546530442060508,2.151493771689803,R S xy O
 0,77,6.0415531254567885,13.910733825016758,10.238202728231837,S
 """