ReadTheDocs updates for HEMCO 3.10.0 #292
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docs/source/hco-ref-guide/more-examples.txt - Removed the "Scale (or zero) emissions with a rectangular mask" example from the "More configuration examples" chapter. @msulprizio pointed out in issue #286 that applying a scale factor to a mask does not currently work, and so this example also does not work properly. CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
docs/source/geos-chem-shared-docs - Updated GNU 10.2.0 -> GNU 12.2.0 in Spack guide docs/source/hco-sa-guide/login-env.rst - Update environment file sample + text for GNU 12.2.0 compilers docs/source/hco-sa-guide/software.rst - The "skip ahead" link now poionts to the "Download the source code" chapter. runHEMCO.sh - Now pipe output to log file - Also updated default SLURM partitions Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the HEMCO superproject about the following commits pushed to the geos-chem-shared-docs submodule: a68981b Update [email protected] -> [email protected] in load-libraries-guide.rst This updates the GCC compiler version from 10.2.0 to 12.2.0 in the various documentation pages. Signed-off-by: Bob Yantosca <[email protected]>
docs/requirements.txt - Use jinja 3.1.4 as there is a dependabot security warning for the previous version 3.1.3. CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
This commit informs the HEMCO superproject about the following commits that were pushed to the GitHub geos-chem-shared-docs repo: 8ed145c Fixed typo in doc/geoschem-config.rst 9c7903d Add GCHP vs. GCC usage differences in HEMCO_Diagn.rc doc b5420bb Add info about usage differences between GCHP & GCC 679cf4c Update geoschem-config.rst and phot-chem.rst 7a3e9db Created doc folder for common docs (not supplemental-guides) Signed-off-by: Bob Yantosca <[email protected]>
yantosca
added
TODO: Documentation
This was referenced Oct 2, 2024
This commit informs the HEMCO superproject about the following commits that were pushed to the geos-chem-shared-docs repository: 65b2a35 Merge "docs/update_guides_for_gchp" into "main" 7f0cfbb Merge PR #3 (Add doc/tutorial for GEOS-Chem input data on AWS) These are documentation updates for the GEOS-Chem 14.5.0 release. Signed-off-by: Bob Yantosca <[email protected]>
docs/source/geos-chem-shared-docs - Submodule update to cd0f4ad (Updates for GC Input Data portal etc) docs/source/hco-sa-guide/download-data.rst - Add text about the new GEOS-Chem Input Data portal - Add toctree with links to dry-run doc, Globus doc, and bashdatacatalog doc docs/source/hco-sa-guide/hco-sa-dry-run.rst - Added this page, based on the GEOS-Chem Classic dry-run doc docs/source/hco-sa-guide/hco-sa-globus - Added this placeholder page docs/source/index.rst - Added "GEOS-Chem Input Data on AWS" to supplemental guides toctree run/download_data.py run/download_data.yml - Added these files, from GEOS-Chem 14.5.0 dry-run CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca <[email protected]>
docs/source/geos-chem-shared-docs: - RTD update: Link to dry-run instructions from GC Input Data doc Signed-off-by: Bob Yantosca <[email protected]>
CHANGELOG.md CMakeLists.txt docs/source/conf.py src/Core/hco_error_mod.F90 - Changed version numbers from 3.9.3 to 3.10.0 docs/source/hco-ref-guide/known-bugs.rst - Added links to Github for open and resolved bugs docs/source/hco-ref-guide/version-history - Updated link text - Added link to GitHub releases page docs/source/hco-sa-guide/download-code.rst - Added --recurse-submodules to git clone command - Removed text about checking out a different branch docs/source/hco-sa-guide/hardware.rst - Removed link to geos-chem-cloud RTD page (it's obsolete) - Added breaks after each list item for readability docs/source/hco-sa-guide/hco-sa-dry-run.rst - Added code for line break character docs/source/hco-sa-guide/hco-sa-globus - Renamed to hco-sa-globus.rst docs/source/hco-sa-guide/hco-sa-globus.rst - Added text Signed-off-by: Bob Yantosca <[email protected]>
msulprizio
approved these changes
Nov 7, 2024
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Name and Institution (Required)
Name: Bob Yantosca
Institution: Harvard + GCST
Describe the update
This PR seeks to merge documentation updates for HEMCO 3.10.0 into the dev/3.10.0 branch. We have made the following general updates:
geoschem_config.yml,HEMCO_Diagn.rc,HEMCO_Config.rc,species_database.yml, and the aerosol/chemistry/photolysis configuration files to the https://github.com/geoschem/geos-chem-shared-docs repo... option::tags, etc)Related Github Issue
NOTES
Tagging @msulprizio @lizziel @yidant