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New submodule: HETP aerosol thermodynamics #528

New submodule: HETP aerosol thermodynamics

New submodule: HETP aerosol thermodynamics #528

# Release pipeline:
#
# This pipeline triggers the cloud-based benchmarking workflow
# upon pushes to the dev environment. The benchmarking workflow
# infrastructure code can be found in the following repository:
# https://github.com/geoschem/gc-cloud-infrastructure
#
# This pipeline is triggered by pushes to dev
#
# Notes:
# - This workflow requires aws credentials necessary to
# trigger the benchmarking step function via the aws cli.
# The credentials need step function permissions and can
# be added to the repo as an action secret called
# AWS_SECRET_ACCESS_KEY and AWS_ACCESS_KEY_ID.
name: cloud_benchmarking
on:
push:
branches:
- dev**
tags:
- '*'
pull_request:
branches:
- dev**
jobs:
trigger_step_function:
runs-on: ubuntu-latest # aws cli comes pre-installed
steps:
# for now both use Spot instances -- may need to update to use on demand
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set Initial Variables
# By default we use 1Hr benchmarks
run: |
echo "TIME_PERIOD=1Hr" >> $GITHUB_ENV
echo "RESOLUTION=4x5" >> $GITHUB_ENV
echo "GITHUB_SHA_SHORT=`echo ${GITHUB_SHA} | cut -c1-7`" >> $GITHUB_ENV
echo "COMMIT_NAME=`echo ${GITHUB_SHA} | cut -c1-7`" >> $GITHUB_ENV
# conditionally overwrite variables if a tag was the triggering event
- name: Reset Initial Variables for pull request
run: |
echo "GITHUB_SHA_SHORT=`echo ${{ github.event.pull_request.head.sha }} | cut -c1-7`" >> $GITHUB_ENV
echo "COMMIT_NAME=`echo ${{ github.event.pull_request.head.sha }} | cut -c1-7`" >> $GITHUB_ENV
if: github.event_name == 'pull_request'
- name: Reset Variables For Tags
# We do a 1Month benchmark for tags
run: |
echo "TIME_PERIOD=1Mon" >> $GITHUB_ENV
echo "COMMIT_NAME=${GITHUB_REF##*/}" >> $GITHUB_ENV
if: startsWith(github.ref, 'refs/tags/')
- name: Generate Primary Key
env:
AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
AWS_DEFAULT_REGION: us-east-1
AWS_DEFAULT_OUTPUT: json
run: |
cd ${{ github.workspace }}
echo "DEV_PRIMARY_KEY=gcc-${RESOLUTION}-${TIME_PERIOD}-`git describe --tags`" >> $GITHUB_ENV
echo "REF_PRIMARY_KEY=`./.github/workflows/findRefKey.sh ${RESOLUTION} ${TIME_PERIOD} ${GITHUB_SHA}`" >> $GITHUB_ENV
- name: Trigger Step Function
env:
# Set config options for aws cli
NUM_CORES: 62
EC2_TYPE: SPOT # SPOT or DEMAND
AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
AWS_DEFAULT_REGION: us-east-1
AWS_DEFAULT_OUTPUT: json
# Note the step function input is sent in as a single json string
run: |
export WORKFLOW_ARN=`aws stepfunctions list-state-machines --output json \
| jq -r '.stateMachines[] | select(.name == "benchmarks-cloud-workflow").stateMachineArn'`
aws stepfunctions start-execution \
--name ${DEV_PRIMARY_KEY} \
--state-machine-arn ${WORKFLOW_ARN} \
--input "{\"event\": {"`
`"\"nameSuffix\": \"${GITHUB_SHA_SHORT}\","`
`"\"primaryKey\": \"${DEV_PRIMARY_KEY}\","`
`"\"simulationType\": \"gcc\","`
`"\"runType\": \"${EC2_TYPE}\","`
`"\"timePeriod\": \"${TIME_PERIOD}\","`
`"\"tag\": \"${COMMIT_NAME}\","`
`"\"numCores\": \"${NUM_CORES}\","`
`"\"memory\": \"40000\","`
`"\"resolution\": \"${RESOLUTION}\","`
`"\"sendEmailNotification\": \"true\""`
`"},"`
`"\"plotting\": {"`
`"\"devPrimaryKey\": \"${DEV_PRIMARY_KEY}\","`
`"\"refPrimaryKey\": \"${REF_PRIMARY_KEY}\""`
`"}}"