MPI support #266
Workflow file for this run
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| --- | |
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| schedule: | |
| - cron: '0 0 15 * *' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| CARGO_TERM_COLOR: always | |
| jobs: | |
| rustfmt: | |
| name: rustfmt | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: {submodules: true} | |
| - name: Install netCDF | |
| run: sudo apt-get update && sudo apt-get install libnetcdf-dev | |
| - name: Install rust | |
| uses: dtolnay/rust-toolchain@stable | |
| with: | |
| toolchain: stable | |
| components: rustfmt, clippy | |
| - name: Check formatting | |
| run: cargo fmt -- --check | |
| - name: Documentation | |
| run: cargo doc --workspace | |
| - name: Clippy | |
| run: cargo clippy --workspace -- -D warnings | |
| test_apt: | |
| name: test apt | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| build: | |
| - stable | |
| - beta | |
| - nightly | |
| include: | |
| - build: stable | |
| rust: stable | |
| - build: beta | |
| rust: beta | |
| - build: nightly | |
| rust: nightly | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: {submodules: false} | |
| - name: Install netcdf | |
| run: sudo apt-get update && sudo apt-get install libnetcdf-dev | |
| - name: Install rust | |
| uses: dtolnay/rust-toolchain@stable | |
| with: | |
| toolchain: ${{ matrix.rust }} | |
| - name: Build | |
| run: cargo build --verbose --workspace --exclude netcdf-src | |
| - name: Test | |
| run: cargo test --verbose --workspace --exclude netcdf-src | |
| conda: | |
| name: conda | |
| runs-on: ${{matrix.os}}-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {os: ubuntu, channel: conda-forge, rust: stable} | |
| - {os: windows, channel: conda-forge, rust: stable} | |
| - {os: macos, channel: conda-forge, rust: stable} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: {submodules: false} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: '${{matrix.rust}}'} | |
| - name: Install conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: {auto-update-conda: false, activate-environment: testenv} | |
| - name: Install netCDF | |
| run: conda install -y -c ${{matrix.channel}} libnetcdf=4.8.1 | |
| - name: Build and test | |
| run: | | |
| export HDF5_DIR="$CONDA_PREFIX" | |
| export NETCDF_DIR="$CONDA_PREFIX" | |
| [ "${{runner.os}}" != "Windows" ] && export RUSTFLAGS="-C link-args=-Wl,-rpath,$CONDA_PREFIX/lib" | |
| cargo test -vv --workspace --exclude netcdf-src | |
| static_builds: | |
| name: static builds | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - {os: ubuntu-latest, rust: stable} | |
| - {os: windows-latest, rust: stable-msvc} | |
| - {os: windows-latest, rust: stable-gnu} | |
| - {os: macos-11, rust: stable} | |
| - {os: macos-latest, rust: stable} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: {submodules: true} | |
| - name: Install Rust (${{matrix.rust}}) | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: '${{matrix.rust}}'} | |
| - name: Build and test | |
| run: cargo test -vv --features static --workspace | |
| addr_san: | |
| name: Address sanitizer | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: {submodules: true} | |
| - name: Install Rust | |
| uses: dtolnay/rust-toolchain@stable | |
| with: {toolchain: nightly} | |
| - name: Run test with sanitizer | |
| env: | |
| RUSTFLAGS: "-Z sanitizer=address" | |
| RUSTDOCFLAGS: "-Z sanitizer=address" | |
| run: cargo test --features netcdf-sys/static --target x86_64-unknown-linux-gnu --workspace | |
| mpi: | |
| name: mpi-runner | |
| runs-on: ubuntu-latest | |
| env: | |
| NETCDF_DIR: /usr/lib/x86_64-linux-gnu/netcdf/mpi/ | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: {submodules: false} | |
| - name: Install netcdf | |
| run: sudo apt-get update && sudo apt-get install libnetcdf-mpi-dev libhdf5-openmpi-dev | |
| - name: Install rust | |
| uses: dtolnay/rust-toolchain@stable | |
| with: | |
| toolchain: "nightly" | |
| - name: Build | |
| run: cargo build --verbose --workspace --exclude netcdf-src --features netcdf/mpi | |
| - name: Test | |
| run: cargo test --verbose --workspace --exclude netcdf-src --features netcdf/mpi | |
| - name: Run example | |
| run: cargo run --verbose --package netcdf-examples --features mpi | |
| - name: Run example in parallel | |
| run: mpirun -np 10 --oversubscribe -- target/debug/netcdf-examples |