Add work in progress Dockerfile #3
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jedbrown
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Aug 20, 2024
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| ENV PETSC_DIR="/home/lithomop_user/petsc-2.3.3-p16" | ||
| ENV PETSC_ARCH="/home/lithomop_user/petsc-2.3.3-p16/lib/linux-gnu-c-debug" |
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PETSC_ARCH should either be unset ("prefix install") or just the identifier (as in linux-gnu-c-debug, or whatever you specify).
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| ENV PETSC_DIR="/home/lithomop_user/petsc-2.3.3-p16" | ||
| ENV PETSC_ARCH="/home/lithomop_user/petsc-2.3.3-p16/lib/linux-gnu-c-debug" | ||
| ENV PATH="/home/lithomop_user/petsc-2.3.3-p16/externalpackages/mpich2-1.0.5p4/bin:${PATH}" |
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This is a build directory (for --download-mpich), but you installed an mpich from apt above (you might have wanted libmpich-dev).
| ENV PETSC_ARCH="/home/lithomop_user/petsc-2.3.3-p16/lib/linux-gnu-c-debug" | ||
| ENV PATH="/home/lithomop_user/petsc-2.3.3-p16/externalpackages/mpich2-1.0.5p4/bin:${PATH}" | ||
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| RUN curl -L -O "https://web.cels.anl.gov/projects/petsc/download/release-snapshots/petsc-2.3.3.tar.gz"; tar -xvf petsc-2.3.3.tar.gz; cd petsc-2.3.3-p16; mkdir externalpackages; cd externalpackages; curl -L -O "https://www.mpich.org/static/downloads/1.0.5p4/mpich2-1.0.5p4.tar.gz"; tar -xvf mpich2-1.0.5p4.tar.gz; cd mpich2-1.0.5p4; ./configure; echo "password" | sudo -S make all; echo "password" | sudo -S make install; |
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Do we really need petsc-2.3.3 (released in 2007) or can we use a later version?
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I'd suggest removing the manual download of mpich and instead use the system version from apt.
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I've made some progress towards compiling lithomop but haven't been able to get there yet. At this point, when I run the configure script in lithomop, this is the error I get:
checking for PETSc dir... /home/lithomop_user/petsc-2.3.3-p16
checking for PETSc arch... /home/lithomop_user/petsc-2.3.3-p16/lib/linux-gnu-c-debug
checking for PETSc config... no
configure: error: PETSc config dir not found; check PETSC_ARCH
It seems like I haven't correctly set one of the PETSC variables required by lithomop. However, I'm not sure what lithomop is expecting. If you have any idea what the issue is, please let me know. It may also be an issue with how I installed PETSC. The details are in the Dockerfile.