Merge pull request #6084 from gassmoeller/remove_deprecated_visualiza…

…tion_options

Remove deprecated visualization options

benchmarks/annulus/instantaneous/annulus.prm

@@ -76,8 +76,12 @@ subsection Postprocess
  end
 
  subsection Visualization
- set List of output variables = density, viscosity, strain rate, dynamic topography, AnnulusVisualizationPostprocessor
+ set List of output variables = material properties, strain rate, dynamic topography, AnnulusVisualizationPostprocessor
  set Time between graphical output = 0
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end
 

benchmarks/annulus/transient/transient_annulus.prm

@@ -53,8 +53,12 @@ subsection Postprocess
  end
 
  subsection Visualization
- set List of output variables = density, gravity, AnnulusVisualizationPostprocessor
+ set List of output variables = material properties, gravity, AnnulusVisualizationPostprocessor
  set Time between graphical output = 0.1
+
+ subsection Material properties
+ set List of material properties = density
+ end
  end
 
  subsection Particles

benchmarks/blankenbach/base_case1a.prm

@@ -97,7 +97,11 @@ subsection Postprocess
 
  subsection Visualization
  set Time between graphical output = 0.05
- set List of output variables = material properties, adiabat, thermal conductivity, heating, artificial viscosity
+ set List of output variables = material properties, adiabat, heating, artificial viscosity
+
+ subsection Material properties
+ set List of material properties = density, thermal expansivity, specific heat, viscosity, thermal conductivity
+ end
  end
 end
 

benchmarks/blankenbach/base_case2a.prm

@@ -97,7 +97,11 @@ subsection Postprocess
 
  subsection Visualization
  set Time between graphical output = 0.05
- set List of output variables = material properties, adiabat, thermal conductivity, heating, artificial viscosity
+ set List of output variables = material properties, adiabat, heating, artificial viscosity
+
+ subsection Material properties
+ set List of material properties = density, thermal expansivity, specific heat, viscosity, thermal conductivity
+ end
  end
 end
 

benchmarks/blankenbach/base_case2b.prm

@@ -99,7 +99,11 @@ subsection Postprocess
 
  subsection Visualization
  set Time between graphical output = 0.002
- set List of output variables = material properties, adiabat, thermal conductivity, heating, artificial viscosity
+ set List of output variables = material properties, adiabat, heating, artificial viscosity
+
+ subsection Material properties
+ set List of material properties = density, thermal expansivity, specific heat, viscosity, thermal conductivity
+ end
  end
 end
 

benchmarks/buiter_et_al_2008_jgr/figure_6_1e20.prm

@@ -172,8 +172,12 @@ subsection Postprocess
  set List of postprocessors = velocity statistics, basic statistics, temperature statistics, visualization
 
  subsection Visualization
- set List of output variables = density, viscosity, strain rate, error indicator, partition
+ set List of output variables = material properties, strain rate, error indicator, partition
  set Time between graphical output = 1e5
  set Interpolate output = false
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end

benchmarks/buiter_et_al_2016_jsg/exp_1.prm

@@ -167,10 +167,14 @@ subsection Postprocess
  set List of postprocessors = velocity statistics, basic statistics, visualization
 
  subsection Visualization
- set List of output variables = density, viscosity, strain rate, named additional outputs
+ set List of output variables = material properties, strain rate, named additional outputs
  set Output format = vtu
  set Time between graphical output = 144
  set Interpolate output = false
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end
 

benchmarks/buiter_et_al_2016_jsg/exp_2_high_resolution.prm

@@ -215,10 +215,14 @@ subsection Postprocess
  set List of postprocessors = velocity statistics, basic statistics, temperature statistics, visualization
 
  subsection Visualization
- set List of output variables = density, viscosity, strain rate, error indicator
+ set List of output variables = material properties, strain rate, error indicator
  set Output format = vtu
  set Time between graphical output = 144 # Equivalent to ~0.5 cm of shortening
  set Interpolate output = true
  set Number of grouped files = 1
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end

benchmarks/burstedde/burstedde.prm

@@ -99,6 +99,10 @@ subsection Postprocess
  set List of postprocessors = visualization, velocity statistics, BursteddePostprocessor
 
  subsection Visualization
- set List of output variables = density, viscosity, strain rate
+ set List of output variables = material properties, strain rate
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end

benchmarks/crameri_et_al/case_1/crameri_benchmark_1.prm

@@ -125,10 +125,14 @@ subsection Postprocess
  set List of postprocessors = visualization,topography
 
  subsection Visualization
- set List of output variables = viscosity
+ set List of output variables = material properties
  set Number of grouped files = 1
  set Output format = vtu
  set Time between graphical output = 1.e4
+
+ subsection Material properties
+ set List of material properties = viscosity
+ end
  end
 end
 

benchmarks/crameri_et_al/case_2/crameri_benchmark_2.prm

@@ -120,10 +120,14 @@ subsection Postprocess
  set List of postprocessors = visualization,topography
 
  subsection Visualization
- set List of output variables = viscosity,density
+ set List of output variables = material properties
  set Number of grouped files = 1
  set Output format = vtu
  set Time between graphical output = 1e6
+
+ subsection Material properties
+ set List of material properties = viscosity, density
+ end
  end
 end
 

benchmarks/doneahuerta/doneahuerta.prm

@@ -76,7 +76,11 @@ subsection Postprocess
  set List of postprocessors = visualization, velocity statistics, DoneaHuertaPostprocessor
 
  subsection Visualization
- set List of output variables = density, viscosity, strain rate, gravity
+ set List of output variables = material properties, strain rate, gravity
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end
 

benchmarks/geoid-spectral-comparison/spectral-comparison.prm

@@ -113,9 +113,13 @@ subsection Postprocess
 
  subsection Visualization
  set Output format = vtu
- set List of output variables = geoid, dynamic topography,  density, viscosity, gravity
+ set List of output variables = geoid, dynamic topography, material properties, gravity
  set Time between graphical output = 0
  set Number of grouped files = 1
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 
  subsection Geoid

benchmarks/grain_size_pinned_state/grain_size_plunge.prm

@@ -152,8 +152,12 @@ subsection Postprocess
  set List of postprocessors = composition statistics, temperature statistics, velocity statistics, visualization, material statistics, ODE statistics
 
  subsection Visualization
- set List of output variables = viscosity, shear stress, stress, stress second invariant
+ set List of output variables = material properties, shear stress, stress, stress second invariant
  set Time between graphical output = 5e3
+
+ subsection Material properties
+ set List of material properties = viscosity
+ end
  end
 end
 

benchmarks/gravity_mantle/mantle_gravity.prm

@@ -57,9 +57,13 @@ subsection Postprocess
  set List of postprocessors = gravity calculation,visualization, material statistics
 
  subsection Visualization
- set List of output variables = density, viscosity
+ set List of output variables = material properties
  set Time between graphical output = 0
  set Interpolate output = false
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 
  subsection Gravity calculation

benchmarks/gravity_thick_shell/thick_shell.prm

@@ -57,9 +57,13 @@ subsection Postprocess
  set List of postprocessors = gravity calculation,visualization
 
  subsection Visualization
- set List of output variables = density
+ set List of output variables = material properties
  set Time between graphical output = 0
  set Interpolate output = false
+
+ subsection Material properties
+ set List of material properties = density
+ end
  end
 
  subsection Gravity calculation

benchmarks/gravity_thin_shell/gravity_thin_shell.prm

@@ -69,9 +69,13 @@ subsection Postprocess
  set List of postprocessors = gravity calculation,visualization
 
  subsection Visualization
- set List of output variables = density, viscosity, partition
+ set List of output variables = material properties, partition
  set Time between graphical output = 0
  set Interpolate output = false
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 
  subsection Gravity calculation

benchmarks/hollow_sphere/hollow_sphere.prm

@@ -91,7 +91,11 @@ subsection Postprocess
  set List of postprocessors = visualization, velocity statistics, HollowSpherePostprocessor, memory statistics, dynamic topography
 
  subsection Visualization
- set List of output variables = density, viscosity, strain rate, dynamic topography, gravity
+ set List of output variables = material properties, strain rate, dynamic topography, gravity
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end
 

benchmarks/inclusion/adaptive.prm.base

@@ -66,7 +66,11 @@ subsection Postprocess
  set List of postprocessors = InclusionPostprocessor, visualization
 
  subsection Visualization
- set List of output variables = viscosity
+ set List of output variables = material properties
  set Time between graphical output = 0
+
+ subsection Material properties
+ set List of material properties = viscosity
+ end
  end
 end

benchmarks/inclusion/compositional_fields/inclusion_compositional_fields.prm

@@ -86,6 +86,10 @@ subsection Postprocess
  set Output format = vtu
  set Number of grouped files = 1
  set Time between graphical output = 0
- set List of output variables = density, viscosity
+ set List of output variables = material properties
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end

benchmarks/inclusion/compositional_fields/inclusion_particles.prm

@@ -88,7 +88,11 @@ subsection Postprocess
  set Output format = vtu
  set Number of grouped files = 1
  set Time between graphical output = 0
- set List of output variables = density, viscosity
+ set List of output variables = material properties
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 
  subsection Particles

benchmarks/king2dcompressible/ala.prm

@@ -171,7 +171,11 @@ subsection Postprocess
 
  subsection Visualization
  set Time between graphical output = 1e-2
- set List of output variables = material properties, adiabat, thermal conductivity, heating, artificial viscosity
+ set List of output variables = material properties, adiabat, heating, artificial viscosity
+
+ subsection Material properties
+ set List of material properties = density, thermal expansivity, specific heat, viscosity, thermal conductivity
+ end
  end
 end
 

benchmarks/layeredflow/layeredflow.prm

@@ -82,7 +82,11 @@ subsection Postprocess
  set List of postprocessors = visualization, velocity statistics, LayeredFlowPostprocessor
 
  subsection Visualization
- set List of output variables = viscosity, strain rate
+ set List of output variables = material properties, strain rate
+
+ subsection Material properties
+ set List of material properties = viscosity
+ end
  end
 end
 

benchmarks/nsinker/nsinker_gmg.prm

@@ -87,6 +87,10 @@ subsection Postprocess
  end
 
  subsection Visualization
- set List of output variables = viscosity
+ set List of output variables = material properties
+
+ subsection Material properties
+ set List of material properties = viscosity
+ end
  end
 end

benchmarks/nsinker_spherical_shell/gmg.prm

@@ -81,6 +81,10 @@ subsection Postprocess
  end
 
  subsection Visualization
- set List of output variables = viscosity
+ set List of output variables = material properties
+
+ subsection Material properties
+ set List of material properties = viscosity
+ end
  end
 end

benchmarks/polydiapirs/polydiapirs.prm

@@ -89,8 +89,12 @@ subsection Postprocess
  set List of postprocessors = visualization, velocity statistics, composition statistics, material statistics, global statistics, Stokes residual
 
  subsection Visualization
- set List of output variables = viscosity,density, strain rate
+ set List of output variables = material properties, strain rate
  set Output format = vtu
  set Time between graphical output = 5
+
+ subsection Material properties
+ set List of material properties = viscosity, density
+ end
  end
 end

benchmarks/rayleigh_taylor_instability/blank.prm

@@ -47,6 +47,10 @@ subsection Postprocess
  subsection Visualization
  set Output format = vtu
  set Time between graphical output = 0
- set List of output variables = density, viscosity, strain rate
+ set List of output variables = material properties, strain rate
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end

benchmarks/rayleigh_taylor_instability/rayleigh_taylor_instability.prm

@@ -70,6 +70,10 @@ subsection Postprocess
  subsection Visualization
  set Output format = vtu
  set Time between graphical output = 0
- set List of output variables = density, viscosity, strain rate
+ set List of output variables = material properties, strain rate
+
+ subsection Material properties
+ set List of material properties = density, viscosity
+ end
  end
 end

benchmarks/rayleigh_taylor_instability_free_surface/kaus_rayleigh_taylor_instability.prm

@@ -147,8 +147,12 @@ subsection Postprocess
 
  subsection Visualization
  set Time between graphical output = 1.0e5
- set List of output variables = viscosity, density
+ set List of output variables = material properties
  set Output mesh velocity = true
+
+ subsection Material properties
+ set List of material properties = viscosity, density
+ end
  end
 
  subsection Topography