Merge pull request #51 from mboudet/master #21
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| name: Lint, test and publish | |
| on: ["push"] | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| - name: Install Flake8 | |
| run: | | |
| pip install flake8 | |
| - name: Flake8 | |
| run: flake8 --ignore=E501,W504 biomaj_download/*.py biomaj_download/download | |
| - name: Install Protoc | |
| uses: arduino/setup-protoc@v3 | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Check that protobuf-compiler has been run | |
| run: | | |
| cd biomaj_download/message | |
| protoc --python_out=. downmessage.proto | |
| git status --porcelain | |
| git diff | |
| if [[ `git status --porcelain` ]]; then | |
| echo "Protobuf-compiler has not been run, please do it and commit the modifed python files" | |
| exit 1 | |
| fi | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| - name: Install requirements | |
| run: | | |
| sudo apt update | |
| sudo apt install libcurl4-openssl-dev libssl-dev | |
| pip install pytest | |
| python setup.py install | |
| - name: Run tests | |
| run: | | |
| LOCAL_IRODS=0 NETWORK=0 pytest -v tests/biomaj_tests.py | |
| pypi: | |
| runs-on: ubuntu-latest | |
| needs: [lint, test] | |
| name: Deploy release to Pypi | |
| environment: | |
| name: release | |
| url: https://pypi.org/p/biomaj-download | |
| permissions: | |
| id-token: write | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| - name: Python install | |
| run: pip install -U pip setuptools build | |
| - name: Build a binary wheel and a source tarball | |
| run: python -m build --sdist --wheel --outdir dist/ . | |
| - name: Publish distribution 📦 to PyPI | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.pypi_password }} |