This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Lint, test and publish | |
| on: ["push"] | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Install Flake8 | |
| run: | | |
| pip install flake8 | |
| - name: Flake8 | |
| run: flake8 --ignore=E501,W504 biomaj_download/*.py biomaj_download/download | |
| - name: Install Protoc | |
| uses: arduino/setup-protoc@v3 | |
| with: | |
| version: "19.6" | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Check that protobuf-compiler has been run | |
| run: | | |
| cd biomaj_download/message | |
| protoc --python_out=. downmessage.proto | |
| git status --porcelain | |
| git diff | |
| if [[ `git status --porcelain` ]]; then | |
| echo "Protobuf-compiler has not been run, please do it and commit the modifed python files" | |
| exit 1 | |
| fi | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Install requirements | |
| run: | | |
| sudo apt update | |
| sudo apt install libcurl4-openssl-dev libssl-dev | |
| pip install pytest | |
| python setup.py install | |
| - name: Run tests | |
| run: | | |
| LOCAL_IRODS=0 NETWORK=0 pytest -v tests/biomaj_tests.py | |
| pkg_build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Check that the package build works | |
| run: | | |
| pip install -U pip setuptools build | |
| python -m build --sdist --wheel --outdir dist/ . | |
| pypi: | |
| runs-on: ubuntu-latest | |
| needs: [lint, test, pkg_build] | |
| name: Deploy release to Pypi | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.8 | |
| - name: Python install | |
| run: pip install -U pip setuptools build | |
| - name: Build a binary wheel and a source tarball | |
| run: python -m build --sdist --wheel --outdir dist/ . | |
| - name: Publish distribution 📦 to PyPI | |
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| password: ${{ secrets.pypi_password }} |