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| name: Lint, test and publish | ||
| on: ["push"] | ||
| jobs: | ||
| lint: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v1 | ||
| with: | ||
| python-version: 3.8 | ||
| - name: Install Flake8 | ||
| run: | | ||
| pip install flake8 | ||
| - name: Flake8 | ||
| run: flake8 --ignore=E501,W504 biomaj_download/*.py biomaj_download/download | ||
| - name: Install Protoc | ||
| uses: arduino/setup-protoc@v3 with: | ||
| version: "3.27.2" | ||
| - name: Check that protobuf-compiler has been run | ||
| run: | | ||
| cd biomaj_download/message | ||
| protoc --python_out=. downmessage.proto | ||
| git status --porcelain | ||
| git diff | ||
| if [[ `git status --porcelain` ]]; then | ||
| echo "Protobuf-compiler has not been run, please do it and commit the modifed python files" | ||
| exit 1 | ||
| fi | ||
| test: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v1 | ||
| with: | ||
| python-version: 3.8 | ||
| - name: Install requirements | ||
| run: | | ||
| sudo apt update | ||
| sudo apt install libcurl4-openssl-dev libssl-dev | ||
| pip install pytest | ||
| python setup.py install | ||
| - name: Run tests | ||
| run: | | ||
| LOCAL_IRODS=0 NETWORK=0 pytest -v tests/biomaj_tests.py | ||
| pkg_build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v1 | ||
| with: | ||
| python-version: 3.8 | ||
| - name: Check that the package build works | ||
| run: | | ||
| pip install -U pip setuptools build | ||
| python -m build --sdist --wheel --outdir dist/ . | ||
| pypi: | ||
| runs-on: ubuntu-latest | ||
| needs: [lint, test, pkg_build] | ||
| name: Deploy release to Pypi | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v1 | ||
| with: | ||
| python-version: 3.8 | ||
| - name: Python install | ||
| run: pip install -U pip setuptools build | ||
| - name: Build a binary wheel and a source tarball | ||
| run: python -m build --sdist --wheel --outdir dist/ . | ||
| - name: Publish distribution 📦 to PyPI | ||
| if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags') | ||
| uses: pypa/gh-action-pypi-publish@master | ||
| with: | ||
| password: ${{ secrets.pypi_password }} | ||
