Merge pull request #47 from genouest/sort #4

	name: Lint, test and publish

	on: ["push"]

	jobs:

	lint:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- uses: actions/setup-python@v1
	with:
	python-version: 3.8
	- name: Install Flake8
	run: \|
	pip install flake8
	- name: Flake8
	run: flake8 --ignore=E501,W504 biomaj_download/*.py biomaj_download/download

	test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v1
	with:
	python-version: 3.8
	- name: Install requirements
	run: \|
	sudo apt update
	sudo apt install libcurl4-openssl-dev libssl-dev
	pip install pytest
	python setup.py install
	- name: Run tests
	run: \|
	LOCAL_IRODS=0 NETWORK=0 pytest -v tests/biomaj_tests.py

	pypi:
	runs-on: ubuntu-latest
	needs: [lint, test]
	name: Deploy release to Pypi
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- uses: actions/setup-python@v1
	with:
	python-version: 3.8
	- name: Python install
	run: pip install -U pip setuptools build
	- name: Build a binary wheel and a source tarball
	run: python -m build --sdist --wheel --outdir dist/ .
	- name: Publish distribution 📦 to PyPI
	if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
	uses: pypa/gh-action-pypi-publish@master
	with:
	password: ${{ secrets.pypi_password }}

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